Chr11.g73289.m1

Anise · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

5,817: bp
Chr11:1,384,932–1,430,943: genomic location

Record overview

Feature identity

Identifier: Chr11.g73289.m1
Feature type: mRNA
Genome collection: Anise
Organism: Persea americana-Anise
Sequence length: 5,817 bp
Genomic location: Chr11:1,384,932–1,430,943
Strand: −

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: Chr11.g73289

eggNOG: 4432.XP_010257601.1,A,[Protein RRP5 homolog]
Gene Ontology: Protein RRP5 homolog | GO:0000460//maturation of 5.8S rRNA; GO:0000462//maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000466//maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0006139//nucleobase-containing compound metabolic process; GO:0006364//rRNA processing; GO:0006396//RNA processing; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0007275//multicellular organism development; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009553//embryo sac development; GO:0009987//cellular process; GO:0010467//gene expression; GO:0016070//RNA metabolic process; GO:0016072//rRNA metabolic process; GO:0022613//ribonucleoprotein complex biogenesis; GO:0030490//maturation of SSU-rRNA; GO:0032501//multicellular organismal process; GO:0032502//developmental process; GO:0034470//ncRNA processing; GO:0034641//cellular nitrogen compound metabolic process; GO:0034660//ncRNA metabolic process; GO:0042254//ribosome biogenesis; GO:0042274//ribosomal small subunit biogenesis; GO:0043170//macromolecule metabolic process; GO:0044085//cellular component biogenesis; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0046483//heterocycle metabolic process; GO:0048229//gametophyte development; GO:0048856//anatomical structure development; GO:0071704//organic substance metabolic process; GO:0071840//cellular component organization or biogenesis; GO:0090304//nucleic acid metabolic process; GO:1901360//organic cyclic compound metabolic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005654//nucleoplasm; GO:0005730//nucleolus; GO:0005886//plasma membrane; GO:0016020//membrane; GO:0030684//preribosome; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032040//small-subunit processome; GO:0032991//macromolecular complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043228//non-membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043232//intracellular non-membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044428//nuclear part; GO:0044446//intracellular organelle part; GO:0044464//cell part; GO:0070013//intracellular organelle lumen; GO:0071944//cell periphery; GO:1990904//ribonucleoprotein complex | GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003723//RNA binding; GO:0005488//binding; GO:0005515//protein binding; GO:0008134//transcription factor binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG: K14792 | RRP5, PDCD11
NR: OVA06347.1 Ribosomal protein S1 [Macleaya cordata]
Swiss-Prot: F4J8K6.2 RecName: Full=rRNA biogenesis protein RRP5; Short=AtRrp5; AltName: Full=Ribosomal RNA-processing protein 5 [Arabidopsis thaliana]

Biological context