Hass · mRNA

PaHa_c251g00220.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

654
bp
unplaced_contig_251:27,508–28,161
genomic location
Record overview

Feature identity

Identifier
PaHa_c251g00220.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
654 bp
Genomic location
unplaced_contig_251:27,508–28,161
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: PDR16 | Seed ortholog: 1157616.A0A1Z5SV83 | COG: S | eggNOG OG: CRAL_TRIO@131567|A-1*, CRAL_TRIO@2759|BCF-22, CRAL_TRIO_N@131567|A-1*, CRAL_TRIO_N@2759|Ao-8
Gene Ontology
GO:0003674 molecular_function; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005628 prospore membrane; GO:0005737 cytoplasm; GO:0005768 endosome; GO:0005811 lipid droplet; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006658 phosphatidylserine metabolic process; GO:0008150 biological_process; GO:0008526 phosphatidylinositol transfer activity; GO:0008654 phospholipid biosynthetic process; GO:0009410 response to xenobiotic stimulus; GO:0010008 endosome membrane; GO:0015914 phospholipid transport; GO:0016126 sterol biosynthetic process; GO:0032934 sterol binding; GO:0035091 phosphatidylinositol binding; GO:0042802 identical protein binding; GO:0043001 Golgi to plasma membrane protein transport; GO:0043942 negative regulation of sexual sporulation resulting in formation of a cellular spore; GO:0071466 cellular response to xenobiotic stimulus; GO:0071561 nucleus-vacuole junction; GO:0071944 cell periphery; GO:0120010 intermembrane phospholipid transfer; GO:0120014 phospholipid transfer activity; GO:1901352 negative regulation of phosphatidylglycerol biosynthetic process; GO:1902556 phosphatidylinositol transporter complex; GO:2001247 positive regulation of phosphatidylcholine biosynthetic process
KEGG
EC: ec:2.7.1.78 | KO: K26544 | Pathway: 03015 | BRITE: 00001, 02000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa_c251g00220.1-CDS-unplaced_contig_251-1787993825:27508..28161
part_of
exonPaHa_c251g00220.1-exon-unplaced_contig_251-1787993825:27508..28161
part_of