Anise · mRNA

Chr01.g07034.m1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,104
bp
Chr01:67,634,451–67,648,474
genomic location
Record overview

Feature identity

Identifier
Chr01.g07034.m1
Feature type
mRNA
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
1,104 bp
Genomic location
Chr01:67,634,451–67,648,474
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010256524.1,K,[Single-stranded DNA-binding protein WHY1]
Gene Ontology
Single-stranded DNA-binding protein WHY1 | GO:0000018//regulation of DNA recombination; GO:0006139//nucleobase-containing compound metabolic process; GO:0006259//DNA metabolic process; GO:0006281//DNA repair; GO:0006355//regulation of transcription, DNA-templated; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0006950//response to stress; GO:0006952//defense response; GO:0006974//cellular response to DNA damage stimulus; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009605//response to external stimulus; GO:0009607//response to biotic stimulus; GO:0009620//response to fungus; GO:0009889//regulation of biosynthetic process; GO:0009890//negative regulation of biosynthetic process; GO:0009891//positive regulation of biosynthetic process; GO:0009892//negative regulation of metabolic process; GO:0009893//positive regulation of metabolic process; GO:0009987//cellular process; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010557//positive regulation of macromolecule biosynthetic process; GO:0010558//negative regulation of macromolecule biosynthetic process; GO:0010604//positive regulation of macromolecule metabolic process; GO:0010605//negative regulation of macromolecule metabolic process; GO:0010628//positive regulation of gene expression; GO:0010639//negative regulation of organelle organization; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0031323//regulation of cellular metabolic process; GO:0031324//negative regulation of cellular metabolic process; GO:0031325//positive regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031327//negative regulation of cellular biosynthetic process; GO:0031328//positive regulation of cellular biosynthetic process; GO:0032204//regulation of telomere maintenance; GO:0032205//negative regulation of telomere maintenance; GO:0032210//regulation of telomere maintenance via telomerase; GO:0032211//negative regulation of telomere maintenance via telomerase; GO:0033043//regulation of organelle organization; GO:0033044//regulation of chromosome organization; GO:0033554//cellular response to stress; GO:0034641//cellular nitrogen compound metabolic process; GO:0043170//macromolecule metabolic process; GO:0043207//response to external biotic stimulus; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044260//cellular macromolecule metabolic process; GO:0045893//positive regulation of transcription, DNA-templated; GO:0045910//negative regulation of DNA recombination; GO:0045934//negative regulation of nucleobase-containing compound metabolic process; GO:0045935//positive regulation of nucleobase-containing compound metabolic process; GO:0046483//heterocycle metabolic process; GO:0048518//positive regulation of biological process; GO:0048519//negative regulation of biological process; GO:0048522//positive regulation of cellular process; GO:0048523//negative regulation of cellular process; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0050832//defense response to fungus; GO:0050896//response to stimulus; GO:0051052//regulation of DNA metabolic process; GO:0051053//negative regulation of DNA metabolic process; GO:0051128//regulation of cellular component organization; GO:0051129//negative regulation of cellular component organization; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051172//negative regulation of nitrogen compound metabolic process; GO:0051173//positive regulation of nitrogen compound metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051254//positive regulation of RNA metabolic process; GO:0051704//multi-organism process; GO:0051707//response to other organism; GO:0051716//cellular response to stimulus; GO:0060255//regulation of macromolecule metabolic process; GO:0065007//biological regulation; GO:0065008//regulation of biological quality; GO:0071704//organic substance metabolic process; GO:0080090//regulation of primary metabolic process; GO:0090304//nucleic acid metabolic process; GO:0098542//defense response to other organism; GO:1901360//organic cyclic compound metabolic process; GO:1902680//positive regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903508//positive regulation of nucleic acid-templated transcription; GO:1904356//regulation of telomere maintenance via telomere lengthening; GO:1904357//negative regulation of telomere maintenance via telomere lengthening; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2000113//negative regulation of cellular macromolecule biosynthetic process; GO:2000278//regulation of DNA biosynthetic process; GO:2000279//negative regulation of DNA biosynthetic process; GO:2001141//regulation of RNA biosynthetic process; GO:2001251//negative regulation of chromosome organization | GO:0000229//cytoplasmic chromosome; GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005694//chromosome; GO:0005737//cytoplasm; GO:0009295//nucleoid; GO:0009507//chloroplast; GO:0009508//plastid chromosome; GO:0009532//plastid stroma; GO:0009536//plastid; GO:0009570//chloroplast stroma; GO:0042646//plastid nucleoid; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043228//non-membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043232//intracellular non-membrane-bounded organelle; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044434//chloroplast part; GO:0044435//plastid part; GO:0044444//cytoplasmic part; GO:0044446//intracellular organelle part; GO:0044464//cell part | GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003697//single-stranded DNA binding; GO:0003700//transcription factor activity, sequence-specific DNA binding; GO:0003723//RNA binding; GO:0003729//mRNA binding; GO:0005488//binding; GO:0042162//telomeric DNA binding; GO:0043565//sequence-specific DNA binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
NR
RWR80185.1 single-stranded DNA-binding protein WHY1, chloroplastic-like protein [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q9LL85.1 RecName: Full=Single-stranded DNA-binding protein WHY1, chloroplastic; AltName: Full=DNA-binding protein p24; AltName: Full=PR-10a binding factor 2; Short=PBF-2; AltName: Full=Protein WHIRLY 1; Short=StWhy1; Flags: Precursor [Solanum tuberosum]
Biological context

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