Feature identity
- Identifier
- PaHa_c189g00320.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,335 bp
- Genomic location
- unplaced_contig_189:40,384–46,125
- Strand
- +
Hass · mRNA
PaHa_c189g00320.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,335
- bp
- unplaced_contig_189:40,384–46,125
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c189g00320
- eggNOG
- Preferred name: ICL1 | Seed ortholog: 40998.A0A2P7Z246 | COG: S | eggNOG OG: ICL@131567|A-1, ICL@2759|HO-13
- Gene Ontology
- GO:0004451 isocitrate lyase activity; GO:0005575 cellular_component; GO:0005737 cytoplasm; GO:0005773 vacuole; GO:0005777 peroxisome; GO:0005782 peroxisomal matrix; GO:0005829 cytosol; GO:0006097 glyoxylate cycle; GO:0009062 fatty acid catabolic process; GO:0009514 glyoxysome; GO:0015976 carbon utilization; GO:0045733 acetate catabolic process; GO:0046421 methylisocitrate lyase activity
- KEGG
- EC: ec:4.1.3.1, ec:4.1.3.30 | KO: K01637 | Pathway: 00630, 01100, 01110, 01200 | Module: M00012 | BRITE: 00001, 01000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c189g00320.1-protein
derives_fromgenePaHa_c189g00320
CDS
part_ofPaHa_c189g00320.1-CDS-unplaced_contig_189-1787993825:40384..40487CDS
part_ofPaHa_c189g00320.1-CDS-unplaced_contig_189-1787993825:41038..41104CDS
part_ofPaHa_c189g00320.1-CDS-unplaced_contig_189-1787993825:41669..41930CDS
part_ofPaHa_c189g00320.1-CDS-unplaced_contig_189-1787993825:42553..42603CDS
part_ofPaHa_c189g00320.1-CDS-unplaced_contig_189-1787993825:44559..44833CDS
part_ofPaHa_c189g00320.1-CDS-unplaced_contig_189-1787993825:45395..45502CDS
part_ofPaHa_c189g00320.1-CDS-unplaced_contig_189-1787993825:45610..46017CDS
part_ofPaHa_c189g00320.1-CDS-unplaced_contig_189-1787993825:46066..46125exon
part_ofPaHa_c189g00320.1-exon-unplaced_contig_189-1787993825:40384..40487exon
part_ofPaHa_c189g00320.1-exon-unplaced_contig_189-1787993825:41038..41104exon
part_ofPaHa_c189g00320.1-exon-unplaced_contig_189-1787993825:41669..41930exon
part_ofPaHa_c189g00320.1-exon-unplaced_contig_189-1787993825:42553..42603exon
part_ofPaHa_c189g00320.1-exon-unplaced_contig_189-1787993825:44559..44833exon
part_ofPaHa_c189g00320.1-exon-unplaced_contig_189-1787993825:45395..45502exon
part_ofPaHa_c189g00320.1-exon-unplaced_contig_189-1787993825:45610..46017exon
part_ofPaHa_c189g00320.1-exon-unplaced_contig_189-1787993825:46066..46125