Anise · gene

Chr06.g48290

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

28,970
bp
Chr06:52,330,718–52,359,687
genomic location
Record overview

Feature identity

Identifier
Chr06.g48290
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
28,970 bp
Genomic location
Chr06:52,330,718–52,359,687
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010248008.1,L,[Replication factor C subunit]
Gene Ontology
Replication factor C subunit | GO:0000003//reproduction; GO:0000280//nuclear division; GO:0000712//resolution of meiotic recombination intermediates; GO:0000723//telomere maintenance; GO:0000731//DNA synthesis involved in DNA repair; GO:0001101//response to acid chemical; GO:0006139//nucleobase-containing compound metabolic process; GO:0006259//DNA metabolic process; GO:0006260//DNA replication; GO:0006261//DNA-dependent DNA replication; GO:0006278//RNA-dependent DNA biosynthetic process; GO:0006281//DNA repair; GO:0006283//transcription-coupled nucleotide-excision repair; GO:0006289//nucleotide-excision repair; GO:0006296//nucleotide-excision repair, DNA incision, 5'-to lesion; GO:0006297//nucleotide-excision repair, DNA gap filling; GO:0006301//postreplication repair; GO:0006310//DNA recombination; GO:0006355//regulation of transcription, DNA-templated; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0006950//response to stress; GO:0006974//cellular response to DNA damage stimulus; GO:0006996//organelle organization; GO:0007004//telomere maintenance via telomerase; GO:0007049//cell cycle; GO:0007059//chromosome segregation; GO:0007127//meiosis I; GO:0007131//reciprocal meiotic recombination; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009719//response to endogenous stimulus; GO:0009725//response to hormone; GO:0009737//response to abscisic acid; GO:0009889//regulation of biosynthetic process; GO:0009987//cellular process; GO:0010033//response to organic substance; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010833//telomere maintenance via telomere lengthening; GO:0016043//cellular component organization; GO:0018130//heterocycle biosynthetic process; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0019438//aromatic compound biosynthetic process; GO:0019725//cellular homeostasis; GO:0019985//translesion synthesis; GO:0022402//cell cycle process; GO:0022414//reproductive process; GO:0031056//regulation of histone modification; GO:0031060//regulation of histone methylation; GO:0031323//regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031399//regulation of protein modification process; GO:0031935//regulation of chromatin silencing; GO:0032200//telomere organization; GO:0032201//telomere maintenance via semi-conservative replication; GO:0032268//regulation of cellular protein metabolic process; GO:0033043//regulation of organelle organization; GO:0033044//regulation of chromosome organization; GO:0033260//nuclear DNA replication; GO:0033554//cellular response to stress; GO:0033683//nucleotide-excision repair, DNA incision; GO:0033993//response to lipid; GO:0034641//cellular nitrogen compound metabolic process; GO:0034645//cellular macromolecule biosynthetic process; GO:0034654//nucleobase-containing compound biosynthetic process; GO:0035825//reciprocal DNA recombination; GO:0042221//response to chemical; GO:0042276//error-prone translesion synthesis; GO:0042592//homeostatic process; GO:0042769//DNA damage response, detection of DNA damage; GO:0043085//positive regulation of catalytic activity; GO:0043170//macromolecule metabolic process; GO:0044093//positive regulation of molecular function; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044249//cellular biosynthetic process; GO:0044260//cellular macromolecule metabolic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0044786//cell cycle DNA replication; GO:0045132//meiotic chromosome segregation; GO:0046483//heterocycle metabolic process; GO:0048285//organelle fission; GO:0050789//regulation of biological process; GO:0050790//regulation of catalytic activity; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051128//regulation of cellular component organization; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051246//regulation of protein metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051276//chromosome organization; GO:0051304//chromosome separation; GO:0051307//meiotic chromosome separation; GO:0051321//meiotic cell cycle; GO:0051570//regulation of histone H3-K9 methylation; GO:0051606//detection of stimulus; GO:0051716//cellular response to stimulus; GO:0060249//anatomical structure homeostasis; GO:0060255//regulation of macromolecule metabolic process; GO:0060968//regulation of gene silencing; GO:0065007//biological regulation; GO:0065008//regulation of biological quality; GO:0065009//regulation of molecular function; GO:0070987//error-free translesion synthesis; GO:0071704//organic substance metabolic process; GO:0071840//cellular component organization or biogenesis; GO:0071897//DNA biosynthetic process; GO:0080090//regulation of primary metabolic process; GO:0090304//nucleic acid metabolic process; GO:0090305//nucleic acid phosphodiester bond hydrolysis; GO:0097305//response to alcohol; GO:0098813//nuclear chromosome segregation; GO:0140013//meiotic nuclear division; GO:1901360//organic cyclic compound metabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901576//organic substance biosynthetic process; GO:1901700//response to oxygen-containing compound; GO:1902275//regulation of chromatin organization; GO:1903046//meiotic cell cycle process; GO:1903506//regulation of nucleic acid-templated transcription; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2001141//regulation of RNA biosynthetic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005654//nucleoplasm; GO:0005657//replication fork; GO:0005663//DNA replication factor C complex; GO:0005694//chromosome; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032991//macromolecular complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043228//non-membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043232//intracellular non-membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044427//chromosomal part; GO:0044428//nuclear part; GO:0044446//intracellular organelle part; GO:0044464//cell part; GO:0070013//intracellular organelle lumen | GO:0000166//nucleotide binding; GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0005488//binding; GO:0005524//ATP binding; GO:0008047//enzyme activator activity; GO:0008144//drug binding; GO:0017076//purine nucleotide binding; GO:0030234//enzyme regulator activity; GO:0030554//adenyl nucleotide binding; GO:0032553//ribonucleotide binding; GO:0032555//purine ribonucleotide binding; GO:0032559//adenyl ribonucleotide binding; GO:0035639//purine ribonucleoside triphosphate binding; GO:0036094//small molecule binding; GO:0043167//ion binding; GO:0043168//anion binding; GO:0097159//organic cyclic compound binding; GO:0097367//carbohydrate derivative binding; GO:0098772//molecular function regulator; GO:1901265//nucleoside phosphate binding; GO:1901363//heterocyclic compound binding
KEGG
K10754 | RFC1
NR
RWR88432.1 replication factor C subunit 1 isoform X2 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q2R2B4.2 RecName: Full=Replication factor C subunit 1; Short=OsRFC1; AltName: Full=Activator 1 large subunit; AltName: Full=Activator 1 subunit 1 [Oryza sativa Japonica Group]
Biological context

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