Anise · gene

Chr07.g49986

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

29,085
bp
Chr07:4,623,455–4,652,539
genomic location
Record overview

Feature identity

Identifier
Chr07.g49986
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
29,085 bp
Genomic location
Chr07:4,623,455–4,652,539
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
29760.VIT_11s0103g00230.t01,L,[U3 small nucleolar RNA-associated protein]
Gene Ontology
U3 small nucleolar RNA-associated protein | GO:0000462//maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0006139//nucleobase-containing compound metabolic process; GO:0006364//rRNA processing; GO:0006396//RNA processing; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009987//cellular process; GO:0010467//gene expression; GO:0016070//RNA metabolic process; GO:0016072//rRNA metabolic process; GO:0022613//ribonucleoprotein complex biogenesis; GO:0030490//maturation of SSU-rRNA; GO:0034470//ncRNA processing; GO:0034641//cellular nitrogen compound metabolic process; GO:0034660//ncRNA metabolic process; GO:0042254//ribosome biogenesis; GO:0042274//ribosomal small subunit biogenesis; GO:0043170//macromolecule metabolic process; GO:0044085//cellular component biogenesis; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0046483//heterocycle metabolic process; GO:0071704//organic substance metabolic process; GO:0071840//cellular component organization or biogenesis; GO:0090304//nucleic acid metabolic process; GO:1901360//organic cyclic compound metabolic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005730//nucleolus; GO:0030684//preribosome; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032040//small-subunit processome; GO:0032991//macromolecular complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043228//non-membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043232//intracellular non-membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044428//nuclear part; GO:0044446//intracellular organelle part; GO:0044464//cell part; GO:0070013//intracellular organelle lumen; GO:1990904//ribonucleoprotein complex | GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003723//RNA binding; GO:0005488//binding; GO:0019843//rRNA binding; GO:0030515//snoRNA binding; GO:0034511//U3 snoRNA binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K14774 | UTP25, DEF
NR
RWR84239.1 U3 small nucleolar RNA-associated protein 25 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q642T7.1 RecName: Full=U3 small nucleolar RNA-associated protein 25 homolog; AltName: Full=Digestive organ expansion factor homolog; AltName: Full=UTP25 small subunit processor component [Xenopus tropicalis]
Biological context

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