Anise · gene

Chr10.g71890

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

48,126
bp
Chr10:30,126,428–30,174,553
genomic location
Record overview

Feature identity

Identifier
Chr10.g71890
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
48,126 bp
Genomic location
Chr10:30,126,428–30,174,553
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010254143.1,K,[Transcription initiation factor TFIID subunit]
Gene Ontology
Transcription initiation factor TFIID subunit | GO:0006139//nucleobase-containing compound metabolic process; GO:0006325//chromatin organization; GO:0006338//chromatin remodeling; GO:0006351//transcription, DNA-templated; GO:0006352//DNA-templated transcription, initiation; GO:0006366//transcription from RNA polymerase II promoter; GO:0006367//transcription initiation from RNA polymerase II promoter; GO:0006464//cellular protein modification process; GO:0006473//protein acetylation; GO:0006475//internal protein amino acid acetylation; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0006996//organelle organization; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009987//cellular process; GO:0010467//gene expression; GO:0016043//cellular component organization; GO:0016070//RNA metabolic process; GO:0016569//covalent chromatin modification; GO:0016570//histone modification; GO:0016573//histone acetylation; GO:0018130//heterocycle biosynthetic process; GO:0018193//peptidyl-amino acid modification; GO:0018205//peptidyl-lysine modification; GO:0018393//internal peptidyl-lysine acetylation; GO:0018394//peptidyl-lysine acetylation; GO:0019438//aromatic compound biosynthetic process; GO:0019538//protein metabolic process; GO:0032774//RNA biosynthetic process; GO:0034641//cellular nitrogen compound metabolic process; GO:0034645//cellular macromolecule biosynthetic process; GO:0034654//nucleobase-containing compound biosynthetic process; GO:0036211//protein modification process; GO:0043170//macromolecule metabolic process; GO:0043412//macromolecule modification; GO:0043543//protein acylation; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044249//cellular biosynthetic process; GO:0044260//cellular macromolecule metabolic process; GO:0044267//cellular protein metabolic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0046483//heterocycle metabolic process; GO:0051276//chromosome organization; GO:0071704//organic substance metabolic process; GO:0071840//cellular component organization or biogenesis; GO:0090304//nucleic acid metabolic process; GO:0097659//nucleic acid-templated transcription; GO:1901360//organic cyclic compound metabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901564//organonitrogen compound metabolic process; GO:1901576//organic substance biosynthetic process | GO:0000123//histone acetyltransferase complex; GO:0000124//SAGA complex; GO:0000228//nuclear chromosome; GO:0000428//DNA-directed RNA polymerase complex; GO:0000785//chromatin; GO:0000790//nuclear chromatin; GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005654//nucleoplasm; GO:0005667//transcription factor complex; GO:0005669//transcription factor TFIID complex; GO:0005694//chromosome; GO:0016591//DNA-directed RNA polymerase II, holoenzyme; GO:0030880//RNA polymerase complex; GO:0031248//protein acetyltransferase complex; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032991//macromolecular complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043228//non-membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043232//intracellular non-membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044427//chromosomal part; GO:0044428//nuclear part; GO:0044446//intracellular organelle part; GO:0044451//nucleoplasm part; GO:0044454//nuclear chromosome part; GO:0044464//cell part; GO:0044798//nuclear transcription factor complex; GO:0055029//nuclear DNA-directed RNA polymerase complex; GO:0061695//transferase complex, transferring phosphorus-containing groups; GO:0070013//intracellular organelle lumen; GO:0070461//SAGA-type complex; GO:0090575//RNA polymerase II transcription factor complex; GO:1902493//acetyltransferase complex; GO:1902494//catalytic complex; GO:1905368//peptidase complex; GO:1990234//transferase complex | -
KEGG
K03131 | TAF6
NR
RWR93612.1 TATA box binding protein associated factor TAF [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q9MAU3.1 RecName: Full=Transcription initiation factor TFIID subunit 6; AltName: Full=Protein EMBRYO DEFECTIVE 2781; AltName: Full=TATA box associated factor II 59; AltName: Full=TBP-associated factor 6; Short=AtTAF6; AltName: Full=Transcription initiation factor TFIID subunit D5 [Arabidopsis thaliana]
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.