Anise · gene

Chr10.g72075

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

7,770
bp
Chr10:33,018,160–33,025,929
genomic location
Record overview

Feature identity

Identifier
Chr10.g72075
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
7,770 bp
Genomic location
Chr10:33,018,160–33,025,929
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
29760.VIT_06s0009g01900.t01,K,[RNA polymerase II subunit A C-terminal domain phosphatase]
Gene Ontology
RNA polymerase II subunit A C-terminal domain phosphatase | GO:0006139//nucleobase-containing compound metabolic process; GO:0006351//transcription, DNA-templated; GO:0006353//DNA-templated transcription, termination; GO:0006355//regulation of transcription, DNA-templated; GO:0006357//regulation of transcription from RNA polymerase II promoter; GO:0006366//transcription from RNA polymerase II promoter; GO:0006369//termination of RNA polymerase II transcription; GO:0006378//mRNA polyadenylation; GO:0006396//RNA processing; GO:0006397//mRNA processing; GO:0006464//cellular protein modification process; GO:0006470//protein dephosphorylation; GO:0006725//cellular aromatic compound metabolic process; GO:0006793//phosphorus metabolic process; GO:0006796//phosphate-containing compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009889//regulation of biosynthetic process; GO:0009987//cellular process; GO:0010467//gene expression; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0016070//RNA metabolic process; GO:0016071//mRNA metabolic process; GO:0016311//dephosphorylation; GO:0018130//heterocycle biosynthetic process; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0019438//aromatic compound biosynthetic process; GO:0019538//protein metabolic process; GO:0031123//RNA 3'-end processing; GO:0031124//mRNA 3'-end processing; GO:0031323//regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0032774//RNA biosynthetic process; GO:0034641//cellular nitrogen compound metabolic process; GO:0034645//cellular macromolecule biosynthetic process; GO:0034654//nucleobase-containing compound biosynthetic process; GO:0036211//protein modification process; GO:0043170//macromolecule metabolic process; GO:0043412//macromolecule modification; GO:0043631//RNA polyadenylation; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044249//cellular biosynthetic process; GO:0044260//cellular macromolecule metabolic process; GO:0044267//cellular protein metabolic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0046483//heterocycle metabolic process; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0060255//regulation of macromolecule metabolic process; GO:0065007//biological regulation; GO:0070940//dephosphorylation of RNA polymerase II C-terminal domain; GO:0071704//organic substance metabolic process; GO:0080090//regulation of primary metabolic process; GO:0090304//nucleic acid metabolic process; GO:0097659//nucleic acid-templated transcription; GO:1901360//organic cyclic compound metabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901564//organonitrogen compound metabolic process; GO:1901576//organic substance biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2001141//regulation of RNA biosynthetic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005654//nucleoplasm; GO:0005847//mRNA cleavage and polyadenylation specificity factor complex; GO:0005849//mRNA cleavage factor complex; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032991//macromolecular complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044428//nuclear part; GO:0044446//intracellular organelle part; GO:0044451//nucleoplasm part; GO:0044464//cell part; GO:0070013//intracellular organelle lumen | GO:0003674//molecular_function; GO:0003824//catalytic activity; GO:0004721//phosphoprotein phosphatase activity; GO:0004722//protein serine/threonine phosphatase activity; GO:0008420//CTD phosphatase activity; GO:0016787//hydrolase activity; GO:0016788//hydrolase activity, acting on ester bonds; GO:0016791//phosphatase activity; GO:0042578//phosphoric ester hydrolase activity
KEGG
K15544 | SSU72
NR
RWR93734.1 RNA polymerase II subunit A C-terminal domain-containing protein [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q5ZJQ7.1 RecName: Full=RNA polymerase II subunit A C-terminal domain phosphatase SSU72; Short=CTD phosphatase SSU72 [Gallus gallus]
Biological context

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