Anise · gene

Chr12.g82151

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

5,464
bp
Chr12:37,543,909–37,549,372
genomic location
Record overview

Feature identity

Identifier
Chr12.g82151
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
5,464 bp
Genomic location
Chr12:37,543,909–37,549,372
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
218851.Aquca_020_00033.1,K,[Transcription initiation factor TFIID subunit]
Gene Ontology
Transcription initiation factor TFIID subunit | GO:0000122//negative regulation of transcription from RNA polymerase II promoter; GO:0001932//regulation of protein phosphorylation; GO:0001933//negative regulation of protein phosphorylation; GO:0006139//nucleobase-containing compound metabolic process; GO:0006351//transcription, DNA-templated; GO:0006352//DNA-templated transcription, initiation; GO:0006355//regulation of transcription, DNA-templated; GO:0006357//regulation of transcription from RNA polymerase II promoter; GO:0006366//transcription from RNA polymerase II promoter; GO:0006367//transcription initiation from RNA polymerase II promoter; GO:0006469//negative regulation of protein kinase activity; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0007154//cell communication; GO:0007165//signal transduction; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009719//response to endogenous stimulus; GO:0009725//response to hormone; GO:0009755//hormone-mediated signaling pathway; GO:0009889//regulation of biosynthetic process; GO:0009890//negative regulation of biosynthetic process; GO:0009891//positive regulation of biosynthetic process; GO:0009892//negative regulation of metabolic process; GO:0009893//positive regulation of metabolic process; GO:0009987//cellular process; GO:0010033//response to organic substance; GO:0010467//gene expression; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010557//positive regulation of macromolecule biosynthetic process; GO:0010558//negative regulation of macromolecule biosynthetic process; GO:0010563//negative regulation of phosphorus metabolic process; GO:0010604//positive regulation of macromolecule metabolic process; GO:0010605//negative regulation of macromolecule metabolic process; GO:0010628//positive regulation of gene expression; GO:0010629//negative regulation of gene expression; GO:0010639//negative regulation of organelle organization; GO:0014070//response to organic cyclic compound; GO:0016043//cellular component organization; GO:0016070//RNA metabolic process; GO:0018130//heterocycle biosynthetic process; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019220//regulation of phosphate metabolic process; GO:0019222//regulation of metabolic process; GO:0019438//aromatic compound biosynthetic process; GO:0022607//cellular component assembly; GO:0023052//signaling; GO:0030518//intracellular steroid hormone receptor signaling pathway; GO:0030520//intracellular estrogen receptor signaling pathway; GO:0030522//intracellular receptor signaling pathway; GO:0031056//regulation of histone modification; GO:0031057//negative regulation of histone modification; GO:0031323//regulation of cellular metabolic process; GO:0031324//negative regulation of cellular metabolic process; GO:0031325//positive regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031327//negative regulation of cellular biosynthetic process; GO:0031328//positive regulation of cellular biosynthetic process; GO:0031399//regulation of protein modification process; GO:0031400//negative regulation of protein modification process; GO:0032268//regulation of cellular protein metabolic process; GO:0032269//negative regulation of cellular protein metabolic process; GO:0032774//RNA biosynthetic process; GO:0032870//cellular response to hormone stimulus; GO:0033043//regulation of organelle organization; GO:0033044//regulation of chromosome organization; GO:0033673//negative regulation of kinase activity; GO:0033993//response to lipid; GO:0034622//cellular macromolecular complex assembly; GO:0034641//cellular nitrogen compound metabolic process; GO:0034645//cellular macromolecule biosynthetic process; GO:0034654//nucleobase-containing compound biosynthetic process; GO:0035065//regulation of histone acetylation; GO:0035067//negative regulation of histone acetylation; GO:0042221//response to chemical; GO:0042325//regulation of phosphorylation; GO:0042326//negative regulation of phosphorylation; GO:0043086//negative regulation of catalytic activity; GO:0043170//macromolecule metabolic process; GO:0043401//steroid hormone mediated signaling pathway; GO:0043549//regulation of kinase activity; GO:0043933//macromolecular complex subunit organization; GO:0044085//cellular component biogenesis; GO:0044092//negative regulation of molecular function; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044249//cellular biosynthetic process; GO:0044260//cellular macromolecule metabolic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0045859//regulation of protein kinase activity; GO:0045892//negative regulation of transcription, DNA-templated; GO:0045893//positive regulation of transcription, DNA-templated; GO:0045934//negative regulation of nucleobase-containing compound metabolic process; GO:0045935//positive regulation of nucleobase-containing compound metabolic process; GO:0045936//negative regulation of phosphate metabolic process; GO:0045944//positive regulation of transcription from RNA polymerase II promoter; GO:0046483//heterocycle metabolic process; GO:0048518//positive regulation of biological process; GO:0048519//negative regulation of biological process; GO:0048522//positive regulation of cellular process; GO:0048523//negative regulation of cellular process; GO:0048545//response to steroid hormone; GO:0050789//regulation of biological process; GO:0050790//regulation of catalytic activity; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051123//RNA polymerase II transcriptional preinitiation complex assembly; GO:0051128//regulation of cellular component organization; GO:0051129//negative regulation of cellular component organization; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051172//negative regulation of nitrogen compound metabolic process; GO:0051173//positive regulation of nitrogen compound metabolic process; GO:0051174//regulation of phosphorus metabolic process; GO:0051246//regulation of protein metabolic process; GO:0051248//negative regulation of protein metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051253//negative regulation of RNA metabolic process; GO:0051254//positive regulation of RNA metabolic process; GO:0051338//regulation of transferase activity; GO:0051348//negative regulation of transferase activity; GO:0051716//cellular response to stimulus; GO:0060255//regulation of macromolecule metabolic process; GO:0065003//macromolecular complex assembly; GO:0065004//protein-DNA complex assembly; GO:0065007//biological regulation; GO:0065009//regulation of molecular function; GO:0070887//cellular response to chemical stimulus; GO:0070897//DNA-templated transcriptional preinitiation complex assembly; GO:0071310//cellular response to organic substance; GO:0071383//cellular response to steroid hormone stimulus; GO:0071396//cellular response to lipid; GO:0071407//cellular response to organic cyclic compound; GO:0071495//cellular response to endogenous stimulus; GO:0071704//organic substance metabolic process; GO:0071824//protein-DNA complex subunit organization; GO:0071840//cellular component organization or biogenesis; GO:0080090//regulation of primary metabolic process; GO:0090304//nucleic acid metabolic process; GO:0097659//nucleic acid-templated transcription; GO:1901360//organic cyclic compound metabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901576//organic substance biosynthetic process; GO:1901983//regulation of protein acetylation; GO:1901984//negative regulation of protein acetylation; GO:1902275//regulation of chromatin organization; GO:1902679//negative regulation of RNA biosynthetic process; GO:1902680//positive regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903507//negative regulation of nucleic acid-templated transcription; GO:1903508//positive regulation of nucleic acid-templated transcription; GO:1905268//negative regulation of chromatin organization; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2000113//negative regulation of cellular macromolecule biosynthetic process; GO:2000756//regulation of peptidyl-lysine acetylation; GO:2000757//negative regulation of peptidyl-lysine acetylation; GO:2001141//regulation of RNA biosynthetic process; GO:2001251//negative regulation of chromosome organization | GO:0000123//histone acetyltransferase complex; GO:0000428//DNA-directed RNA polymerase complex; GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005654//nucleoplasm; GO:0005667//transcription factor complex; GO:0005669//transcription factor TFIID complex; GO:0005737//cytoplasm; GO:0005794//Golgi apparatus; GO:0012505//endomembrane system; GO:0016591//DNA-directed RNA polymerase II, holoenzyme; GO:0030880//RNA polymerase complex; GO:0031248//protein acetyltransferase complex; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032991//macromolecular complex; GO:0033276//transcription factor TFTC complex; GO:0034708//methyltransferase complex; GO:0035097//histone methyltransferase complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044428//nuclear part; GO:0044444//cytoplasmic part; GO:0044446//intracellular organelle part; GO:0044451//nucleoplasm part; GO:0044464//cell part; GO:0044665//MLL1/2 complex; GO:0044798//nuclear transcription factor complex; GO:0055029//nuclear DNA-directed RNA polymerase complex; GO:0061695//transferase complex, transferring phosphorus-containing groups; GO:0070013//intracellular organelle lumen; GO:0070461//SAGA-type complex; GO:0071339//MLL1 complex; GO:0090575//RNA polymerase II transcription factor complex; GO:1902493//acetyltransferase complex; GO:1902494//catalytic complex; GO:1990234//transferase complex | GO:0001067//regulatory region nucleic acid binding; GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003712//transcription cofactor activity; GO:0003713//transcription coactivator activity; GO:0005102//receptor binding; GO:0005488//binding; GO:0005515//protein binding; GO:0008134//transcription factor binding; GO:0019899//enzyme binding; GO:0035035//histone acetyltransferase binding; GO:0035257//nuclear hormone receptor binding; GO:0042809//vitamin D receptor binding; GO:0044212//transcription regulatory region DNA binding; GO:0046966//thyroid hormone receptor binding; GO:0046982//protein heterodimerization activity; GO:0046983//protein dimerization activity; GO:0051427//hormone receptor binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K03132 | TAF7
NR
RWR96614.1 transcription initiation factor TFIID subunit 7 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
B9DG24.1 RecName: Full=Transcription initiation factor TFIID subunit 7; AltName: Full=TBP-associated factor 7; Short=AtTAF7 [Arabidopsis thaliana]
Biological context

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