Hass · mRNA

PaHa01g29630.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

13,011
bp
1:77,587,348–77,756,382
genomic location
Record overview

Feature identity

Identifier
PaHa01g29630.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
13,011 bp
Genomic location
1:77,587,348–77,756,382
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104609851 | Seed ortholog: 56857.A0A200QQL4 | COG: S | eggNOG OG: Chorein_N@131567|A-1*, Chorein_N@2759|Bu-11!, Chorein_N@35493|UR-20, PH@131567|Aa-8, PH@2759|Os-15!, SHR-BD@131567|A-1*, SHR-BD@2759|O-4!, SHR-BD@35493|Fz-13, VPS13@131567|A-1*, VPS13@2759|C-2!, VPS13@35493|HQ-15, VPS13_mid_rpt@131567|A-1*, VPS13_mid_rpt@33090|B-2!, VPS13_mid_rpt@35493|V-6, Vps62@131567|M-4, Vps62@33090|CA-10
Gene Ontology
GO:0000045 autophagosome assembly; GO:0000325 plant-type vacuole; GO:0000423 mitophagy; GO:0000425 pexophagy; GO:0000902 cell morphogenesis; GO:0001553 luteinization; GO:0001934 positive regulation of protein phosphorylation; GO:0001954 positive regulation of cell-matrix adhesion; GO:0002026 regulation of the force of heart contraction; GO:0002029 desensitization of G protein-coupled receptor signaling pathway; GO:0002031 G protein-coupled receptor internalization; GO:0003108 negative regulation of the force of heart contraction by chemical signal; GO:0003315 heart rudiment formation; GO:0003674 molecular_function; GO:0005794 Golgi apparatus; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006468 protein phosphorylation; GO:0006623 protein targeting to vacuole; GO:0006661 phosphatidylinositol biosynthetic process; GO:0006886 intracellular protein transport; GO:0006895 Golgi to endosome transport; GO:0006914 autophagy; GO:0006979 response to oxidative stress; GO:0007005 mitochondrion organization; GO:0007165 signal transduction; GO:0007166 cell surface receptor signaling pathway; GO:0007186 G protein-coupled receptor signaling pathway; GO:0007213 G protein-coupled acetylcholine receptor signaling pathway; GO:0007217 tachykinin receptor signaling pathway; GO:0007224 smoothened signaling pathway; GO:0007283 spermatogenesis; GO:0007399 nervous system development; GO:0007507 heart development; GO:0007520 myoblast fusion; GO:0007603 phototransduction, visible light; GO:0007626 locomotory behavior; GO:0008016 regulation of heart contraction; GO:0008104 intracellular protein localization; GO:0008150 biological_process; GO:0008209 androgen metabolic process; GO:0008210 estrogen metabolic process; GO:0008344 adult locomotory behavior; GO:0008585 female gonad development; GO:0009267 cellular response to starvation; GO:0009306 protein secretion; GO:0009506 plasmodesma; GO:0009617 response to bacterium; GO:0009791 post-embryonic development; GO:0009966 regulation of signal transduction; GO:0010015 root morphogenesis; GO:0010082 regulation of root meristem growth; GO:0010467 gene expression; GO:0010661 positive regulation of muscle cell apoptotic process; GO:0010801 negative regulation of peptidyl-threonine phosphorylation; GO:0014004 microglia differentiation; GO:0014850 response to muscle activity; GO:0016045 detection of bacterium; GO:0016060 negative regulation of phospholipase C-activating phototransduction signaling pathway; GO:0016236 macroautophagy; GO:0018105 peptidyl-serine phosphorylation; GO:0018107 peptidyl-threonine phosphorylation; GO:0019079 viral genome replication; GO:0030036 actin cytoskeleton organization; GO:0030218 erythrocyte differentiation; GO:0030317 flagellated sperm motility; GO:0030382 sperm mitochondrion organization; GO:0031154 culmination involved in sorocarp development; GO:0031529 ruffle organization; GO:0031547 brain-derived neurotrophic factor receptor signaling pathway; GO:0031623 receptor internalization; GO:0032120 ascospore-type prospore membrane formation; GO:0032755 positive regulation of interleukin-6 production; GO:0032868 response to insulin; GO:0032960 regulation of inositol trisphosphate biosynthetic process; GO:0033137 negative regulation of peptidyl-serine phosphorylation; GO:0033327 Leydig cell differentiation; GO:0033605 positive regulation of catecholamine secretion; GO:0034727 piecemeal microautophagy of the nucleus; GO:0035176 social behavior; GO:0035264 multicellular organism growth; GO:0035640 exploration behavior; GO:0035721 intraciliary retrograde transport; GO:0036258 multivesicular body assembly; GO:0036269 swimming behavior; GO:0042311 vasodilation; GO:0042542 response to hydrogen peroxide; GO:0042699 follicle-stimulating hormone signaling pathway; GO:0043009 chordate embryonic development; GO:0043066 negative regulation of apoptotic process; GO:0043087 regulation of GTPase activity; GO:0043491 phosphatidylinositol 3-kinase/protein kinase B signal transduction; GO:0043647 inositol phosphate metabolic process; GO:0044321 response to leptin; GO:0045053 protein retention in Golgi apparatus; GO:0045184 establishment of protein localization; GO:0045324 late endosome to vacuole transport; GO:0045880 positive regulation of smoothened signaling pathway; GO:0045907 positive regulation of vasoconstriction; GO:0045988 negative regulation of striated muscle contraction; GO:0046154 rhodopsin metabolic process; GO:0046325 negative regulation of D-glucose import across plasma membrane; GO:0046718 symbiont entry into host cell; GO:0048008 platelet-derived growth factor receptor signaling pathway; GO:0048146 positive regulation of fibroblast proliferation; GO:0048167 regulation of synaptic plasticity; GO:0048193 Golgi vesicle transport; GO:0048705 skeletal system morphogenesis; GO:0048709 oligodendrocyte differentiation; GO:0048870 cell motility; GO:0050829 defense response to Gram-negative bacterium; GO:0050853 B cell receptor signaling pathway; GO:0050885 neuromuscular process controlling balance; GO:0050905 neuromuscular process; GO:0050920 regulation of chemotaxis; GO:0051457 maintenance of protein location in nucleus; GO:0051593 response to folic acid; GO:0051898 negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; GO:0055001 muscle cell development; GO:0060021 roof of mouth development; GO:0060048 cardiac muscle contraction; GO:0060292 long-term synaptic depression; GO:0060325 face morphogenesis; GO:0061709 reticulophagy; GO:0061744 motor behavior; GO:0061771 response to caloric restriction; GO:0070301 cellular response to hydrogen peroxide; GO:0070374 positive regulation of ERK1 and ERK2 cascade; GO:0070610 regulation of fungal-type cell wall (1->3)-alpha-glucan biosynthetic process; GO:0071333 cellular response to glucose stimulus; GO:0071364 cellular response to epidermal growth factor stimulus; GO:0071470 cellular response to osmotic stress; GO:0071870 cellular response to catecholamine stimulus; GO:0071880 adenylate cyclase-activating adrenergic receptor signaling pathway; GO:0072752 cellular response to rapamycin; GO:0090083 regulation of inclusion body assembly; GO:0090648 response to environmental enrichment; GO:0106072 negative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway; GO:0120009 intermembrane lipid transfer; GO:0120010 intermembrane phospholipid transfer; GO:0140058 neuron projection arborization; GO:0140986 G protein-coupled chemorepellent receptor signaling pathway; GO:0150076 neuroinflammatory response; GO:1900077 negative regulation of cellular response to insulin stimulus; GO:1901081 negative regulation of relaxation of smooth muscle; GO:1901526 positive regulation of mitophagy; GO:1903566 positive regulation of protein localization to cilium; GO:1903568 negative regulation of protein localization to ciliary membrane; GO:1904628 cellular response to phorbol 13-acetate 12-myristate; GO:1904707 positive regulation of vascular associated smooth muscle cell proliferation; GO:1905090 negative regulation of type 2 mitophagy; GO:1905146 lysosomal protein catabolic process; GO:1905801 positive regulation of intraciliary retrograde transport; GO:1990064 ground tissue pattern formation; GO:1990869 cellular response to chemokine; GO:2000463 positive regulation of excitatory postsynaptic potential; GO:2001234 negative regulation of apoptotic signaling pathway
KEGG
EC: ec:2.7.1.154, ec:2.7.11.15, ec:3.1.4.11, ec:3.4.15.1 | KO: K19525 | Pathway: 00562, 01100, 04012, 04020, 04062, 04070, 04144, 04340, 04370, 04724, 04740, 04745, 05032 | Module: M00130 | BRITE: 00001, 04131
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa01g29630.1-CDS-1-1787993825:77587348..77587444
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77593752..77593855
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77593987..77594121
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77594204..77594254
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77594977..77595071
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77595147..77595264
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77599764..77599865
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77599954..77600142
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77600222..77600382
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77614583..77614753
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77615140..77615232
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77615312..77615636
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77615742..77615846
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77615926..77616021
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77616223..77616290
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77626688..77626808
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77626895..77627101
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77627200..77627403
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77627499..77627608
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77633598..77633694
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77633804..77633902
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77655081..77655242
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77655346..77655420
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77655512..77656006
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77656105..77656446
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77656538..77656669
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77670741..77670854
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77670933..77671117
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77671242..77671350
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77678898..77679041
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77679147..77679437
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77696589..77697245
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77697363..77697551
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77697658..77697761
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77704561..77704850
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77704959..77705043
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77705134..77705487
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77705577..77705936
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77706027..77706513
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77706680..77706843
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77707989..77708154
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77708303..77708572
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77708800..77708997
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77713887..77713929
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77714061..77714179
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77714348..77714591
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77714760..77714854
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77723864..77724640
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77724740..77724810
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77724927..77725272
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77725360..77725458
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77725539..77725694
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77740910..77741091
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77741187..77741711
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77741892..77742069
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77742177..77742313
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77747776..77747902
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77748044..77748265
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77748343..77748702
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77750795..77750953
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77751095..77751373
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77751462..77751677
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77751761..77751813
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77754512..77754620
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77754985..77755198
part_of
CDSPaHa01g29630.1-CDS-1-1787993825:77756204..77756382
part_of
exonPaHa01g29630.1-exon-1-1787993825:77587348..77587444
part_of
exonPaHa01g29630.1-exon-1-1787993825:77593752..77593855
part_of
exonPaHa01g29630.1-exon-1-1787993825:77593987..77594121
part_of
exonPaHa01g29630.1-exon-1-1787993825:77594204..77594254
part_of
exonPaHa01g29630.1-exon-1-1787993825:77594977..77595071
part_of
exonPaHa01g29630.1-exon-1-1787993825:77595147..77595264
part_of
exonPaHa01g29630.1-exon-1-1787993825:77599764..77599865
part_of
exonPaHa01g29630.1-exon-1-1787993825:77599954..77600142
part_of
exonPaHa01g29630.1-exon-1-1787993825:77600222..77600382
part_of
exonPaHa01g29630.1-exon-1-1787993825:77614583..77614753
part_of
exonPaHa01g29630.1-exon-1-1787993825:77615140..77615232
part_of
exonPaHa01g29630.1-exon-1-1787993825:77615312..77615636
part_of
exonPaHa01g29630.1-exon-1-1787993825:77615742..77615846
part_of
exonPaHa01g29630.1-exon-1-1787993825:77615926..77616021
part_of
exonPaHa01g29630.1-exon-1-1787993825:77616223..77616290
part_of
exonPaHa01g29630.1-exon-1-1787993825:77626688..77626808
part_of
exonPaHa01g29630.1-exon-1-1787993825:77626895..77627101
part_of
exonPaHa01g29630.1-exon-1-1787993825:77627200..77627403
part_of
exonPaHa01g29630.1-exon-1-1787993825:77627499..77627608
part_of
exonPaHa01g29630.1-exon-1-1787993825:77633598..77633694
part_of
exonPaHa01g29630.1-exon-1-1787993825:77633804..77633902
part_of
exonPaHa01g29630.1-exon-1-1787993825:77655081..77655242
part_of
exonPaHa01g29630.1-exon-1-1787993825:77655346..77655420
part_of
exonPaHa01g29630.1-exon-1-1787993825:77655512..77656006
part_of
exonPaHa01g29630.1-exon-1-1787993825:77656105..77656446
part_of
exonPaHa01g29630.1-exon-1-1787993825:77656538..77656669
part_of
exonPaHa01g29630.1-exon-1-1787993825:77670741..77670854
part_of
exonPaHa01g29630.1-exon-1-1787993825:77670933..77671117
part_of
exonPaHa01g29630.1-exon-1-1787993825:77671242..77671350
part_of
exonPaHa01g29630.1-exon-1-1787993825:77678898..77679041
part_of
exonPaHa01g29630.1-exon-1-1787993825:77679147..77679437
part_of
exonPaHa01g29630.1-exon-1-1787993825:77696589..77697245
part_of