Feature identity
- Identifier
- Pa02g1420.1
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 1,149 bp
- Genomic location
- Pa02:23,433,541–23,449,618
- Strand
- −
West Indian T2T · mRNA
Pa02g1420.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,149
- bp
- Pa02:23,433,541–23,449,618
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa02g1420
- eggNOG
- Preferred name: LOC103710266 | Seed ortholog: 337451.A0A443N2Z6 | COG: COG0330 | eggNOG OG: Band_7@131567|C-2!
- Gene Ontology
- GO:0005515 protein binding; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0015485 cholesterol binding; GO:0031625 ubiquitin protein ligase binding; GO:0032933 SREBP signaling pathway; GO:0032991 protein-containing complex; GO:0036503 ERAD pathway; GO:0045121 membrane raft; GO:0045540 regulation of cholesterol biosynthetic process; GO:0045541 negative regulation of cholesterol biosynthetic process; GO:0045717 negative regulation of fatty acid biosynthetic process
- KEGG
- KO: K23341 | BRITE: 00001, 04121
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa02g1420.1-protein
derives_frommRNAPa02g1420.1
mRNAPa02g1420.1
part_ofgenePa02g1420
exon
part_ofPa02g1420.1:1mRNAPa02g1420.1
exon
part_ofPa02g1420.1:2mRNAPa02g1420.1
exon
part_ofPa02g1420.1:3mRNAPa02g1420.1
exon
part_ofPa02g1420.1:4mRNAPa02g1420.1
exon
part_ofPa02g1420.1:5mRNAPa02g1420.1
exon
part_ofPa02g1420.1:6mRNAPa02g1420.1
exon
part_ofPa02g1420.1:7mRNAPa02g1420.1
exon
part_ofPa02g1420.1:8mRNAPa02g1420.1
exon
part_ofPa02g1420.1:9mRNAPa02g1420.1
CDS
part_ofPa02g1420.1:cdsmRNAPa02g1420.1
