Feature identity
- Identifier
- Pa05g0354.2
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 1,263 bp
- Genomic location
- Pa05:5,641,379–5,646,340
- Strand
- +
West Indian T2T · mRNA
Pa05g0354.2
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,263
- bp
- Pa05:5,641,379–5,646,340
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa05g0354
- eggNOG
- Preferred name: PHR1 | Seed ortholog: 337451.A0A443Q3K6 | COG: S | eggNOG OG: Myb_CC_LHEQLE@131567|A-1*, Myb_CC_LHEQLE@33090|AN-11, Myb_CC_LHEQLE@3398|Id-17, Myb_DNA-binding@131567|dl-20, Myb_DNA-binding@2759|pK-22, Myb_DNA-binding@33090|Ctc-35
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0048364 root development; GO:1901000 regulation of response to salt stress
- KEGG
- EC: ec:6.3.4.5 | KO: K01940 | Pathway: 00220, 00250, 01100, 01110, 01230 | Module: M00029, M00844, M00845, M00978 | BRITE: 00001, 01000, 04147
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa05g0354.2-protein
derives_frommRNAPa05g0354.2
exon
part_ofPa05g0354.1:2mRNAPa05g0354.2
exon
part_ofPa05g0354.1:3mRNAPa05g0354.2
exon
part_ofPa05g0354.1:4mRNAPa05g0354.2
exon
part_ofPa05g0354.1:5mRNAPa05g0354.2
exon
part_ofPa05g0354.1:6mRNAPa05g0354.2
exon
part_ofPa05g0354.1:7mRNAPa05g0354.2
mRNAPa05g0354.2
part_ofgenePa05g0354
exon
part_ofPa05g0354.2:8mRNAPa05g0354.2
CDS
part_ofPa05g0354.2:cdsmRNAPa05g0354.2
