Feature identity
- Identifier
- Pa06g0306.2
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 5,490 bp
- Genomic location
- Pa06:3,958,012–3,973,875
- Strand
- +
West Indian T2T · mRNA
Pa06g0306.2
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 5,490
- bp
- Pa06:3,958,012–3,973,875
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa06g0306
- eggNOG
- Preferred name: LOC104599474 | Seed ortholog: 337451.A0A443PFP3 | COG: S | eggNOG OG: DDT@131567|B-2!, DDT@33090|x-7, DDT@3398|CF-10, HARE-HTH@131567|A-1, HARE-HTH@3398|Jg-14, Homeodomain@131567|ED-11, Homeodomain@2759|NS-15, Homeodomain@33090|AGU-20, WHIM1@131567|C-2, WHIM1@33090|DO-10, WHIM1@3398|Id-13, WSD@131567|A-1*, WSD@33090|P-5, WSD@3398|Bf-9
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0031010 ISWI-type complex; GO:0045892 negative regulation of DNA-templated transcription
- KEGG
- EC: ec:2.3.1.48 | KO: K09301, K09307, K09320, K09326, K09327, K09364, K09451, K09533, K11655, K11658, K11728, K15224, K22768, K22866, K26167 | Pathway: 03082 | BRITE: 00001, 01000, 03000, 03021, 03036, 03037, 03041, 03110
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa06g0306.2-protein
derives_frommRNAPa06g0306.2
mRNAPa06g0306.2
part_ofgenePa06g0306
exon
part_ofPa06g0306.2:1mRNAPa06g0306.2
exon
part_ofPa06g0306.2:10mRNAPa06g0306.2
exon
part_ofPa06g0306.2:11mRNAPa06g0306.2
exon
part_ofPa06g0306.2:12mRNAPa06g0306.2
exon
part_ofPa06g0306.2:13mRNAPa06g0306.2
exon
part_ofPa06g0306.2:14mRNAPa06g0306.2
exon
part_ofPa06g0306.2:15mRNAPa06g0306.2
exon
part_ofPa06g0306.2:16mRNAPa06g0306.2
exon
part_ofPa06g0306.2:17mRNAPa06g0306.2
exon
part_ofPa06g0306.2:18mRNAPa06g0306.2
exon
part_ofPa06g0306.2:2mRNAPa06g0306.2
exon
part_ofPa06g0306.2:3mRNAPa06g0306.2
exon
part_ofPa06g0306.2:4mRNAPa06g0306.2
exon
part_ofPa06g0306.2:5mRNAPa06g0306.2
exon
part_ofPa06g0306.2:6mRNAPa06g0306.2
exon
part_ofPa06g0306.2:7mRNAPa06g0306.2
exon
part_ofPa06g0306.2:8mRNAPa06g0306.2
exon
part_ofPa06g0306.2:9mRNAPa06g0306.2
CDS
part_ofPa06g0306.2:cdsmRNAPa06g0306.2
