Feature identity
- Identifier
- Pa11g1905.2
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 2,400 bp
- Genomic location
- Pa11:47,602,315–47,613,335
- Strand
- −
West Indian T2T · mRNA
Pa11g1905.2
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,400
- bp
- Pa11:47,602,315–47,613,335
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa11g1905
- eggNOG
- Preferred name: LOC109011131 | Seed ortholog: 337451.A0A3S3PKP5 | COG: S | eggNOG OG: Anticodon_3@131567|A-1, Anticodon_3@3398|CEH-35, tRNA-synt_1g@131567|AT-7, tRNA-synt_1g@1437183|ERB-36, tRNA_bind@131567|h-6
- Gene Ontology
- GO:0002181 cytoplasmic translation; GO:0004825 methionine-tRNA ligase activity; GO:0005515 protein binding; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006418 tRNA aminoacylation for protein translation; GO:0006424 glutamyl-tRNA aminoacylation; GO:0006431 methionyl-tRNA aminoacylation; GO:0008270 zinc ion binding; GO:0009303 rRNA transcription; GO:0036120 cellular response to platelet-derived growth factor stimulus; GO:0050667 homocysteine metabolic process; GO:0071364 cellular response to epidermal growth factor stimulus; GO:1901838 positive regulation of transcription of nucleolar large rRNA by RNA polymerase I; GO:1990825 sequence-specific mRNA binding
- KEGG
- EC: ec:6.1.1.10 | KO: K01874 | Pathway: 00450, 00970, 01100 | BRITE: 00001, 01000, 01007, 01613, 03016
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa11g1905.2-protein
derives_frommRNAPa11g1905.2
exon
part_ofPa11g1905.1:10mRNAPa11g1905.2
exon
part_ofPa11g1905.1:11mRNAPa11g1905.2
exon
part_ofPa11g1905.1:12mRNAPa11g1905.2
exon
part_ofPa11g1905.1:13mRNAPa11g1905.2
exon
part_ofPa11g1905.1:14mRNAPa11g1905.2
exon
part_ofPa11g1905.1:15mRNAPa11g1905.2
exon
part_ofPa11g1905.1:16mRNAPa11g1905.2
exon
part_ofPa11g1905.1:17mRNAPa11g1905.2
exon
part_ofPa11g1905.1:18mRNAPa11g1905.2
exon
part_ofPa11g1905.1:3mRNAPa11g1905.2
exon
part_ofPa11g1905.1:4mRNAPa11g1905.2
exon
part_ofPa11g1905.1:5mRNAPa11g1905.2
exon
part_ofPa11g1905.1:6mRNAPa11g1905.2
exon
part_ofPa11g1905.1:7mRNAPa11g1905.2
exon
part_ofPa11g1905.1:8mRNAPa11g1905.2
exon
part_ofPa11g1905.1:9mRNAPa11g1905.2
mRNAPa11g1905.2
part_ofgenePa11g1905
exon
part_ofPa11g1905.2:19mRNAPa11g1905.2
CDS
part_ofPa11g1905.2:cdsmRNAPa11g1905.2
