Feature identity
- Identifier
- Pa12g0305.2
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 5,604 bp
- Genomic location
- Pa12:2,905,331–3,057,665
- Strand
- −
West Indian T2T · mRNA
Pa12g0305.2
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 5,604
- bp
- Pa12:2,905,331–3,057,665
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa12g0305
- eggNOG
- Preferred name: LOC100819576, LOC104596082 | Seed ortholog: 4432.A0A1U8A1C0, 56857.A0A200QRM3 | COG: S | eggNOG OG: ARID@131567|A-1*, ARID@2759|CS-9, JmjC@131567|Ae-7, JmjC@2759|Xi-17, JmjN@131567|A-1*, JmjN@2759|Bi-10, PHD@131567|A-1*, PHD@2759|Vu-13, PLU-1@131567|A-1, zf-C5HC2@131567|A-1*, zf-C5HC2@2759|C-2!
- Gene Ontology
- GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0009414 response to water deprivation; GO:0009737 response to abscisic acid; GO:0009738 abscisic acid-activated signaling pathway; GO:0031490 chromatin DNA binding; GO:0032453 histone H3K4 demethylase activity; GO:0034647 histone H3K4me/H3K4me2/H3K4me3 demethylase activity; GO:0043565 sequence-specific DNA binding; GO:0045814 negative regulation of gene expression, epigenetic; GO:0048589 developmental growth; GO:0090333 regulation of stomatal closure; GO:0099402 plant organ development
- KEGG
- EC: ec:1.14.11.67 | KO: K11446 | Pathway: 03022, 03082, 03083, 04550 | BRITE: 00001, 01000, 01009, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa12g0305.2-protein
derives_frommRNAPa12g0305.2
mRNAPa12g0305.2
part_ofgenePa12g0305
exon
part_ofPa12g0305.2:1mRNAPa12g0305.2
exon
part_ofPa12g0305.2:10mRNAPa12g0305.2
exon
part_ofPa12g0305.2:11mRNAPa12g0305.2
exon
part_ofPa12g0305.2:12mRNAPa12g0305.2
exon
part_ofPa12g0305.2:13mRNAPa12g0305.2
exon
part_ofPa12g0305.2:14mRNAPa12g0305.2
exon
part_ofPa12g0305.2:15mRNAPa12g0305.2
exon
part_ofPa12g0305.2:16mRNAPa12g0305.2
exon
part_ofPa12g0305.2:17mRNAPa12g0305.2
exon
part_ofPa12g0305.2:18mRNAPa12g0305.2
exon
part_ofPa12g0305.2:19mRNAPa12g0305.2
exon
part_ofPa12g0305.2:2mRNAPa12g0305.2
exon
part_ofPa12g0305.2:20mRNAPa12g0305.2
exon
part_ofPa12g0305.2:21mRNAPa12g0305.2
exon
part_ofPa12g0305.2:22mRNAPa12g0305.2
exon
part_ofPa12g0305.2:23mRNAPa12g0305.2
exon
part_ofPa12g0305.2:24mRNAPa12g0305.2
exon
part_ofPa12g0305.2:25mRNAPa12g0305.2
exon
part_ofPa12g0305.2:26mRNAPa12g0305.2
exon
part_ofPa12g0305.2:27mRNAPa12g0305.2
exon
part_ofPa12g0305.2:28mRNAPa12g0305.2
exon
part_ofPa12g0305.2:29mRNAPa12g0305.2
exon
part_ofPa12g0305.2:3mRNAPa12g0305.2
exon
part_ofPa12g0305.2:30mRNAPa12g0305.2
exon
part_ofPa12g0305.2:31mRNAPa12g0305.2
exon
part_ofPa12g0305.2:32mRNAPa12g0305.2
exon
part_ofPa12g0305.2:33mRNAPa12g0305.2
exon
part_ofPa12g0305.2:4mRNAPa12g0305.2
exon
part_ofPa12g0305.2:5mRNAPa12g0305.2
exon
part_ofPa12g0305.2:6mRNAPa12g0305.2
exon
part_ofPa12g0305.2:7mRNAPa12g0305.2
exon
part_ofPa12g0305.2:8mRNAPa12g0305.2
exon
part_ofPa12g0305.2:9mRNAPa12g0305.2
CDS
part_ofPa12g0305.2:cdsmRNAPa12g0305.2
