West Indian T2T · gene

Pa11g1800

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

14,427
bp
Pa11:46,178,161–46,192,587
genomic location
Record overview

Feature identity

Identifier
Pa11g1800
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
14,427 bp
Genomic location
Pa11:46,178,161–46,192,587
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104593941 | Seed ortholog: 337451.A0A443PPL7 | COG: S | eggNOG OG: DUF5601@131567|A-1*, DUF5601@2759|B-2!, DUF5601@3398|BI-9, VPS9@131567|A-1*, VPS9@2759|Hl-11, VPS9@3398|AzT-28
Gene Ontology
GO:0000011 vacuole inheritance; GO:0001933 negative regulation of protein phosphorylation; GO:0002686 negative regulation of leukocyte migration; GO:0003674 molecular_function; GO:0005085 guanyl-nucleotide exchange factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005768 endosome; GO:0005769 early endosome; GO:0005794 Golgi apparatus; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006612 protein targeting to membrane; GO:0006623 protein targeting to vacuole; GO:0006895 Golgi to endosome transport; GO:0006897 endocytosis; GO:0007474 imaginal disc-derived wing vein specification; GO:0008150 biological_process; GO:0010608 post-transcriptional regulation of gene expression; GO:0016192 vesicle-mediated transport; GO:0016197 endosomal transport; GO:0018996 molting cycle, collagen and cuticulin-based cuticle; GO:0020016 ciliary pocket; GO:0030139 endocytic vesicle; GO:0031152 aggregation involved in sorocarp development; GO:0031267 small GTPase binding; GO:0031398 positive regulation of protein ubiquitination; GO:0031901 early endosome membrane; GO:0031982 vesicle; GO:0032483 regulation of Rab protein signal transduction; GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway; GO:0032715 negative regulation of interleukin-6 production; GO:0032794 GTPase activating protein binding; GO:0033004 negative regulation of mast cell activation; GO:0034058 endosomal vesicle fusion; GO:0035214 eye-antennal disc development; GO:0036010 protein localization to endosome; GO:0036166 phenotypic switching; GO:0040015 negative regulation of multicellular organism growth; GO:0043130 ubiquitin binding; GO:0043305 negative regulation of mast cell degranulation; GO:0043326 chemotaxis to folate; GO:0045177 apical part of cell; GO:0045296 cadherin binding; GO:0046580 negative regulation of Ras protein signal transduction; GO:0048261 negative regulation of receptor-mediated endocytosis; GO:0050728 negative regulation of inflammatory response; GO:0051223 regulation of protein transport; GO:0055037 recycling endosome; GO:0060368 regulation of Fc receptor mediated stimulatory signaling pathway; GO:0061630 ubiquitin protein ligase activity; GO:0071444 cellular response to pheromone; GO:0098830 presynaptic endosome; GO:0098935 dendritic transport; GO:1900235 negative regulation of Kit signaling pathway
KEGG
KO: K20131 | Pathway: 04137 | BRITE: 00001, 04131
Biological context

Connected feature records

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