West Indian T2T · gene

Pa10g0744

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

288
bp
Pa10:22,201,541–22,201,828
genomic location
Record overview

Feature identity

Identifier
Pa10g0744
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
288 bp
Genomic location
Pa10:22,201,541–22,201,828
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104599872 | Seed ortholog: 337451.A0A3S3QFX8 | COG: S | eggNOG OG: bZIP_2@131567|Fg-13, bZIP_2@2759|Sb-17
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0001094 TFIID-class transcription factor complex binding; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006995 cellular response to nitrogen starvation; GO:0009267 cellular response to starvation; GO:0010688 negative regulation of ribosomal protein gene transcription by RNA polymerase II; GO:0030447 filamentous growth; GO:0031669 cellular response to nutrient levels; GO:0034198 cellular response to amino acid starvation; GO:0034599 cellular response to oxidative stress; GO:0035556 intracellular signal transduction; GO:0036033 mediator complex binding; GO:0036171 filamentous growth of a population of unicellular organisms in response to chemical stimulus; GO:0036178 filamentous growth of a population of unicellular organisms in response to neutral pH; GO:0036244 cellular response to neutral pH; GO:0042802 identical protein binding; GO:0043565 sequence-specific DNA binding; GO:0044011 single-species biofilm formation on inanimate substrate; GO:0044182 filamentous growth of a population of unicellular organisms; GO:0045893 positive regulation of DNA-templated transcription; GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0060261 positive regulation of transcription initiation by RNA polymerase II; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0090575 RNA polymerase II transcription regulator complex; GO:0097316 cellular response to N-acetyl-D-glucosamine; GO:1900233 positive regulation of single-species biofilm formation on inanimate substrate; GO:1900442 positive regulation of filamentous growth of a population of unicellular organisms in response to neutral pH; GO:1903833 positive regulation of cellular response to amino acid starvation; GO:1990139 protein localization to nuclear periphery; GO:1990928 response to amino acid starvation
KEGG
KO: K20557 | Pathway: 04016 | BRITE: 00001, 03000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.