Feature identity
- Identifier
- Pa02g4342
- Feature type
- gene
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 4,529 bp
- Genomic location
- Pa02:94,131,098–94,135,626
- Strand
- −
West Indian T2T · gene
Pa02g4342
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 4,529
- bp
- Pa02:94,131,098–94,135,626
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
- eggNOG
- Preferred name: LOC107910899 | Seed ortholog: 337451.A0A443N7S9 | COG: S | eggNOG OG: FAR1@131567|A-1*, FAR1@2759|C-2!, MULE@131567|BE-8, MULE@2759|Dt-10
- Gene Ontology
- GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003674 molecular_function; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0007623 circadian rhythm; GO:0009506 plasmodesma; GO:0009585 red, far-red light phototransduction; GO:0009639 response to red or far red light; GO:0010017 red or far-red light signaling pathway; GO:0010018 far-red light signaling pathway; GO:0010218 response to far red light; GO:0042753 positive regulation of circadian rhythm; GO:0045893 positive regulation of DNA-templated transcription; GO:1900056 negative regulation of leaf senescence
- KEGG
- EC: ec:2.1.1.117, ec:5.3.1.6 | KO: K01807, K13397, K17604 | Pathway: 00030, 00710, 00950, 01100, 01110, 01200, 01230 | Module: M00004, M00007, M00165, M00580, M00946 | BRITE: 00001, 01000, 01009
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
mRNAPa02g4342.1
part_ofgenePa02g4342
