Feature identity
- Identifier
- PaHa04g21370.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 3,723 bp
- Genomic location
- 4:54,671,915–54,681,929
- Strand
- −
Hass · mRNA
PaHa04g21370.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 3,723
- bp
- 4:54,671,915–54,681,929
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g21370
- eggNOG
- Preferred name: LOC107942651 | Seed ortholog: 337451.A0A3S3N0W2 | COG: S | eggNOG OG: LNS2@131567|A-1, LNS2@58023|EM-17, Lipin_N@2759|A-1, Lipin_N@3193|Dc-16, Lipin_mid@2759|A-1, Lipin_mid@3398|f-7
- Gene Ontology
- GO:0000287 magnesium ion binding; GO:0000976 transcription cis-regulatory region binding; GO:0003674 molecular_function; GO:0003713 transcription coactivator activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006629 lipid metabolic process; GO:0008195 phosphatidate phosphatase activity; GO:0008654 phospholipid biosynthetic process; GO:0016036 cellular response to phosphate starvation; GO:0016791 phosphatase activity; GO:0019375 galactolipid biosynthetic process; GO:0042826 histone deacetylase binding; GO:0042975 peroxisome proliferator activated receptor binding; GO:0048046 apoplast; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding
- KEGG
- EC: ec:3.1.3.4 | KO: K15728 | Pathway: 00561, 00564, 01100, 01110 | Module: M00089 | BRITE: 00001, 01000, 01009
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g21370.1-protein
derives_frommRNAPaHa04g21370.1
mRNAPaHa04g21370.1
part_ofgenePaHa04g21370
CDS
part_ofPaHa04g21370.1-CDS-4-1787993825:54671915..54671971mRNAPaHa04g21370.1
CDS
part_ofPaHa04g21370.1-CDS-4-1787993825:54672409..54672507mRNAPaHa04g21370.1
CDS
part_ofPaHa04g21370.1-CDS-4-1787993825:54672660..54672788mRNAPaHa04g21370.1
CDS
part_ofPaHa04g21370.1-CDS-4-1787993825:54674624..54674667mRNAPaHa04g21370.1
CDS
part_ofPaHa04g21370.1-CDS-4-1787993825:54676374..54676446mRNAPaHa04g21370.1
CDS
part_ofPaHa04g21370.1-CDS-4-1787993825:54676610..54676696mRNAPaHa04g21370.1
CDS
part_ofPaHa04g21370.1-CDS-4-1787993825:54677530..54677614mRNAPaHa04g21370.1
CDS
part_ofPaHa04g21370.1-CDS-4-1787993825:54678116..54678189mRNAPaHa04g21370.1
CDS
part_ofPaHa04g21370.1-CDS-4-1787993825:54678270..54678841mRNAPaHa04g21370.1
CDS
part_ofPaHa04g21370.1-CDS-4-1787993825:54679427..54681929mRNAPaHa04g21370.1
exon
part_ofPaHa04g21370.1-exon-4-1787993825:54671915..54671971mRNAPaHa04g21370.1
exon
part_ofPaHa04g21370.1-exon-4-1787993825:54672409..54672507mRNAPaHa04g21370.1
exon
part_ofPaHa04g21370.1-exon-4-1787993825:54672660..54672788mRNAPaHa04g21370.1
exon
part_ofPaHa04g21370.1-exon-4-1787993825:54674624..54674667mRNAPaHa04g21370.1
exon
part_ofPaHa04g21370.1-exon-4-1787993825:54676374..54676446mRNAPaHa04g21370.1
exon
part_ofPaHa04g21370.1-exon-4-1787993825:54676610..54676696mRNAPaHa04g21370.1
exon
part_ofPaHa04g21370.1-exon-4-1787993825:54677530..54677614mRNAPaHa04g21370.1
exon
part_ofPaHa04g21370.1-exon-4-1787993825:54678116..54678189mRNAPaHa04g21370.1
exon
part_ofPaHa04g21370.1-exon-4-1787993825:54678270..54678841mRNAPaHa04g21370.1
exon
part_ofPaHa04g21370.1-exon-4-1787993825:54679427..54681929mRNAPaHa04g21370.1
