Functional discovery

Search genes by biological annotation

Search integrated eggNOG, Gene Ontology, and KEGG evidence with phrases such as fatty acid, lipid metabolism, kinase, or transcription factor.

32,046
West Indian T2T annotations
3+
indexed evidence types

Keyword matching is case-insensitive. Results remain collection-specific and represent computational annotation evidence, not experimental validation.

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2,385 genes for “transcription factor”

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SelectGeneMatched annotationEvidenceActions
Pa08g0280Pa08g0280.1

…O:0003727 | GO:0005634 | GO:0005737 | GO:0006355 | GO:0061157 | DNA binding | DNA-binding transcription factor activity | RNA binding | single-stranded RNA binding | nucleus | cytoplasm | regulation of DNA-templated transcription | mRNA destabilization

Show annotation evidence
eggNOG
Preferred name: LOC109001542 | Seed ortholog: 337451.A0A443P9G6 | COG: S | eggNOG OG: zf-CCCH_4@131567|A-1*, zf-CCCH_4@2759|AB-6
GO
GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003723 RNA binding; GO:0003727 single-stranded RNA binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0061157 mRNA destabilization
KEGG
EC: ec:2.3.2.27 | KO: K23047 | Pathway: 03015 | BRITE: 00001, 01000, 04121
eggNOGGOKEGG
eggNOG-inferred
Pa08g0288Pa08g0288.1

…nscription cis-regulatory region binding | molecular_function | DNA binding | DNA-binding transcription factor activity | protein binding | nucleus | regulation of DNA-templated transcription | response to heat | response to cold | response to nematode | response to high light intensity | response t…

Show annotation evidence
eggNOG
Preferred name: LOC103724189 | Seed ortholog: 337451.A0A3S3QM97 | COG: S | eggNOG OG: AP2@131567|Eb-12, AP2@1437183|hb-20!, AP2@33090|Hk-14, C2orf69@2759|A-1
GO
GO:0000302 response to reactive oxygen species; GO:0000976 transcription cis-regulatory region binding; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009408 response to heat; GO:0009409 response to cold; GO:0009624 response to nematode; GO:0009644...
KEGG
EC: ec:1.1.1.184, ec:1.1.1.189, ec:1.1.1.197 | KO: K09286 | Pathway: 00590, 00790, 00980, 01100 | BRITE: 00001, 03000
eggNOGGOKEGG
eggNOG-inferred
Pa08g0289Pa08g0289.1

…nscription cis-regulatory region binding | molecular_function | DNA binding | DNA-binding transcription factor activity | protein binding | nucleus | regulation of DNA-templated transcription | response to heat | response to cold | response to nematode | response to high light intensity | response t…

Show annotation evidence
eggNOG
Preferred name: LOC103724189 | Seed ortholog: 337451.A0A3S3QM97 | COG: S | eggNOG OG: AP2@131567|Eb-12, AP2@1437183|hb-20!, AP2@33090|Hk-14, C2orf69@2759|A-1
GO
GO:0000302 response to reactive oxygen species; GO:0000976 transcription cis-regulatory region binding; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009408 response to heat; GO:0009409 response to cold; GO:0009624 response to nematode; GO:0009644...
KEGG
EC: ec:1.1.1.184, ec:1.1.1.189, ec:1.1.1.197 | KO: K09286 | Pathway: 00590, 00790, 00980, 01100 | BRITE: 00001, 03000
eggNOGGOKEGG
eggNOG-inferred
Pa08g0290Pa08g0290.1

…orphogenesis | sinoatrial valve morphogenesis | cardiac ventricle formation | DNA-binding transcription factor activity | protein binding | nucleus | DNA-templated transcription | regulation of DNA-templated transcription | regulation of transcription by RNA polymerase II | humoral immune response |…

Show annotation evidence
eggNOG
Preferred name: AGL84 | Seed ortholog: 337451.A0A443P9F3 | COG: S | eggNOG OG: SRF-TF@131567|A-1*, SRF-TF@1437183|BX-12, SRF-TF@2759|C-2!, SRF-TF@3193|Az-11
GO
GO:0000086 G2/M transition of mitotic cell cycle; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000165 MAPK cascade; GO:0001568 blood vessel development; GO:0001569 branching involved in blood vessel morphogenesis; GO:0001649 osteoblast differentiation; GO:0001666 response to hypoxia; GO:0001701 in utero embryonic development; GO:0001707 mesoderm formation; GO:0001708 cell fate...
KEGG
KO: K12412 | Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 | BRITE: 00001, 03000, 03021
eggNOGGOKEGG
eggNOG-inferred
Pa08g0301Pa08g0301.1

…gion binding | developmental process involved in reproduction | DNA binding | DNA-binding transcription factor activity | protein binding | nucleus | shade avoidance | response to auxin | auxin-activated signaling pathway | response to cytokinin | unidimensional cell growth | shoot system morphogene…

Show annotation evidence
eggNOG
Preferred name: LOC104610464 | Seed ortholog: 337451.A0A3S3NGZ3 | COG: S | eggNOG OG: HALZ@131567|y-8, HALZ@3193|Bd-11, HALZ@3398|Ll-16, HALZ@35493|Au-10, HD-ZIP_N@131567|A-1*, HD-ZIP_N@3193|d-9!, Homeodomain@131221|HaM-32, Homeodomain@131567|XU-17, Homeodomain@2759|ACU-20!, Homeodomain@3193|Tih-40, Homeodomain@3398|fHj-46, Homeodomain@35493|BwP-25
GO
GO:0000976 transcription cis-regulatory region binding; GO:0003006 developmental process involved in reproduction; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009641 shade avoidance; GO:0009733 response to auxin; GO:0009734 auxin-activated signaling pathway; GO:0009735 response to cytokinin; GO:0009826 unidimensional cell growth;...
KEGG
KO: K09338 | Pathway: 04113, 04148, 04927, 04934, 05202 | BRITE: 00001, 03000
eggNOGGOKEGG
eggNOG-inferred
Pa08g0312Pa08g0312.1

…700 | GO:0005634 | GO:0009834 | transcription cis-regulatory region binding | DNA-binding transcription factor activity | nucleus | plant-type secondary cell wall biogenesis

Show annotation evidence
eggNOG
Preferred name: LOC110794647 | Seed ortholog: 337451.A0A443P9I9 | COG: S | eggNOG OG: AP2@131567|DU-11, AP2@1437183|GWx-33, AP2@33090|KR-15, AP2@3398|AmB-24, AP2@58023|ld-20
GO
GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0009834 plant-type secondary cell wall biogenesis
KEGG
KO: K09286 | BRITE: 00001, 03000
eggNOGGOKEGG
eggNOG-inferred
Pa08g0318Pa08g0318.1

Pa08g0318 | Pa08g0318.1 | LOC104598042 | 337451.A0A443NBK9 | SF3b1@2759|A-1 | S | K12828 | 03040 | 00001 | 03036 | 03041 | SF3b1_286_416 | GO:0000245 | GO:0000375 | GO:0000387 | GO:0000388 | GO:0000398 | GO:0000785 | GO:0001825 | GO:0003682 | GO:0003723 |...

Show annotation evidence
eggNOG
Preferred name: LOC104598042 | Seed ortholog: 337451.A0A443NBK9 | COG: S | eggNOG OG: SF3b1@2759|A-1
GO
GO:0000245 spliceosomal complex assembly; GO:0000375 RNA splicing, via transesterification reactions; GO:0000387 spliceosomal snRNP assembly; GO:0000388 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11); GO:0000398 mRNA splicing, via spliceosome; GO:0000785 chromatin; GO:0001825 blastocyst formation; GO:0003682 chromatin binding; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0005515...
KEGG
KO: K12828 | Pathway: 03040 | BRITE: 00001, 03036, 03041
eggNOGGOKEGG
eggNOG-inferred
Pa08g0329Pa08g0329.1

Pa08g0329 | Pa08g0329.1 | LOC104602368 | 337451.A0A443P9P3 | PG_binding_1@131221|FHh-28 | PG_binding_1@131567|e-5 | PG_binding_1@1437183|LvT-37 | PG_binding_1@2759|ABO-15 | PG_binding_1@3193|GaS-30 | Peptidase_M10@131567|AY-8 | Peptidase_M10@1437183|BaV-35 ...

Show annotation evidence
eggNOG
Preferred name: LOC104602368 | Seed ortholog: 337451.A0A443P9P3 | COG: S | eggNOG OG: PG_binding_1@131221|FHh-28, PG_binding_1@131567|e-5, PG_binding_1@1437183|LvT-37, PG_binding_1@2759|ABO-15, PG_binding_1@3193|GaS-30, Peptidase_M10@131567|AY-8, Peptidase_M10@1437183|BaV-35, Peptidase_M10@58023|AQi-28
GO
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0001501 skeletal system development; GO:0001503 ossification; GO:0001525 angiogenesis; GO:0001541 ovarian follicle development; GO:0001542 ovulation from ovarian follicle; GO:0001553 luteinization; GO:0001554 luteolysis; GO:0001649 osteoblast differentiation; GO:0001666 response to hypoxia; GO:0001755 neural crest cell migration; GO:0001822...
KEGG
EC: ec:3.4.24.12, ec:3.4.24.17, ec:3.4.24.22, ec:3.4.24.23, ec:3.4.24.24, ec:3.4.24.34, ec:3.4.24.35, ec:3.4.24.65, ec:3.4.24.7, ec:3.4.24.80 | KO: K07999 | Pathway: 01522, 03320, 04310, 04657, 04668, 04670, 04912, 04915, 04926, 04928, 04933, 05161, 05166, 05171, 05200, 05202, 05205, 05206, 05215, 05219, 05323, 05415, 05417, 05418 | BRITE: 00001, 01002
eggNOGGOKEGG
eggNOG-inferred
Pa08g0333Pa08g0333.1

…700 | GO:0005634 | GO:0009416 | transcription cis-regulatory region binding | DNA-binding transcription factor activity | nucleus | response to light stimulus

Show annotation evidence
eggNOG
Preferred name: GATA2 | Seed ortholog: 337451.A0A3S3MPM5 | COG: S | eggNOG OG: GATA@131567|A-1*, GATA@2759|B-2!, GATA@3193|Ad-8, GATA@3398|bb-17, GATA@58023|Op-15
GO
GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0009416 response to light stimulus
KEGG
EC: ec:2.7.11.22, ec:2.8.1.7, ec:5.6.2.7, ec:6.3.2.2 | KO: K04487, K05626, K05628, K06669, K08817, K09182, K09183, K09184, K11204, K11339, K11648, K11660, K11770, K14809, K14972, K17604, K17894, K17895, K17896, K17897, K18658, K21630, K22040, K22184, K23194, K23407 | Pathway: 00270, 00480, 00730, 01100, 01240, 03082, 03250, 04022, 04122, 04218, 04530, 04658, 04659, 04919, 04928, 05321 | Module: M00118 | BRITE:...
eggNOGGOKEGG
eggNOG-inferred
Pa08g0335Pa08g0335.1

…GO:0009845 | GO:0009959 | GO:0010187 | GO:0010218 | GO:0043565 | GO:0090351 | DNA-binding transcription factor activity | protein binding | nucleus | DNA-templated transcription | regulation of DNA-templated transcription | response to light stimulus | plasmodesma | double fertilization forming a zy…

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eggNOG
Preferred name: UNE10 | Seed ortholog: 337451.A0A443P9N3 | COG: S | eggNOG OG: HLH@131221|BVX-22, HLH@131567|Zg-14!, HLH@3193|CEo-24, HLH@33090|AbI-19, HLH@3398|KBj-34, HLH@35493|AqB-20, HLH@58023|GdY-31
GO
GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006351 DNA-templated transcription; GO:0006355 regulation of DNA-templated transcription; GO:0009416 response to light stimulus; GO:0009506 plasmodesma; GO:0009567 double fertilization forming a zygote and endosperm; GO:0009637 response to blue light; GO:0009704 de-etiolation; GO:0009753 response to jasmonic...
KEGG
KO: K12126 | Pathway: 04075, 04712 | BRITE: 00001, 03000
eggNOGGOKEGG
eggNOG-inferred
Pa08g0341Pa08g0341.1

…634 | GO:0005737 | GO:0006355 | transcription cis-regulatory region binding | DNA-binding transcription factor activity | nucleus | cytoplasm | regulation of DNA-templated transcription

Show annotation evidence
eggNOG
Preferred name: ZAT4 | Seed ortholog: 337451.A0A443P9L9 | COG: S | eggNOG OG: zf-C2H2_6@131567|B-2, zf-C2H2_6@1437183|Rt-17, zf-C2H2_6@3398|DU-12
GO
GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription
eggNOGGO
eggNOG-inferred
Pa08g0357Pa08g0357.1

…154 | GO:0048768 | GO:0051301 | transcription cis-regulatory region binding | DNA-binding transcription factor activity | protein binding | nucleus | regulation of DNA-templated transcription | circadian rhythm | cell differentiation | root hair cell tip growth | cell division

Show annotation evidence
eggNOG
Preferred name: SCL6 | Seed ortholog: 337451.A0A443P9Q7 | COG: S | eggNOG OG: GRAS@131567|n-8, GRAS@3193|CH-12, GRAS@3398|JO-16, GRAS@58023|DN-13
GO
GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0007623 circadian rhythm; GO:0030154 cell differentiation; GO:0048768 root hair cell tip growth; GO:0051301 cell division
KEGG
KO: K27747 | BRITE: 00001, 03000
eggNOGGOKEGG
eggNOG-inferred
Pa08g0385Pa08g0385.1

…706 | GO:1902183 | GO:2000024 | transcription cis-regulatory region binding | DNA-binding transcription factor activity | protein binding | nucleus | regulation of DNA-templated transcription | regulation of flower development | meristem structural organization | polarity specification of adaxial/ab…

Show annotation evidence
eggNOG
Preferred name: YAB1 | Seed ortholog: 337451.A0A3S3NH32 | COG: S | eggNOG OG: YABBY@2759|C-2!, YABBY@3398|Cc-11
GO
GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009909 regulation of flower development; GO:0009933 meristem structural organization; GO:0009944 polarity specification of adaxial/abaxial axis; GO:0010093 specification of floral organ identity; GO...
KEGG
KO: K25796 | BRITE: 00001, 03000
eggNOGGOKEGG
eggNOG-inferred
Pa08g0406Pa08g0406.1

…nsed chromosome | transcription cis-regulatory region binding | DNA binding | DNA-binding transcription factor activity | protein binding | nucleus | nucleolus | cytosol | regulation of DNA-templated transcription | negative regulation of cell population proliferation | asymmetric cell division | re…

Show annotation evidence
eggNOG
Preferred name: ODO1 | Seed ortholog: 337451.A0A3S3QP85 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AOS-27, Myb_DNA-binding@1437183|TFc-50, Myb_DNA-binding@3193|LZd-44, Myb_DNA-binding@33090|Eca-37
GO
GO:0000793 condensed chromosome; GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0005829 cytosol; GO:0006355 regulation of DNA-templated transcription; GO:0008285 negative regulation of cell population proliferation; GO:0008356 asymmetric cell division; GO...
KEGG
KO: K09422 | BRITE: 00001, 03000
eggNOGGOKEGG
eggNOG-inferred
Pa08g0445Pa08g0445.1

… of meristem growth | leaf vascular tissue pattern formation | leaf shaping | DNA-binding transcription factor binding

Show annotation evidence
eggNOG
Preferred name: ZPR4 | Seed ortholog: 337451.A0A3S3N3E9 | COG: S | eggNOG OG: UNK.H0AK@131567|A-1*, UNK.H0AK@3398|C-2!
GO
GO:0003712 transcription coregulator activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009943 adaxial/abaxial axis specification; GO:0010073 meristem maintenance; GO:0010075 regulation of meristem growth; GO:0010305 leaf vascular tissue pattern formation; GO:0010358 leaf shaping; GO:0140297 DNA-binding transcription factor binding
eggNOGGO
eggNOG-inferred
Pa08g0466Pa08g0466.1

…ne response-activating signaling pathway | molecular_function | DNA binding | DNA-binding transcription factor activity | mRNA binding | adenylate cyclase activity | protein binding | nucleus | cytoplasm | cytosol | defense response | response to cold | response to water deprivation | response to li…

Show annotation evidence
eggNOG
Preferred name: LOC110789516 | Seed ortholog: 337451.A0A443PPA8 | COG: S | eggNOG OG: NB-ARC@131567|AC-6, NB-ARC@3398|MMM-43, TIR@131567|fs-17, TIR@1437183|EDM-37, TIR@2759|CAj-29, TIR@3193|CNu-30
GO
GO:0000166 nucleotide binding; GO:0002220 innate immune response activating cell surface receptor signaling pathway; GO:0002229 defense response to oomycetes; GO:0002230 positive regulation of defense response to virus by host; GO:0002238 response to molecule of fungal origin; GO:0002239 response to oomycetes; GO:0002758 innate immune response-activating signaling pathway; GO:0003674 molecular_function; GO:0003677...
KEGG
EC: ec:2.7.1.107, ec:3.1.3.16 | KO: K00901, K03094, K06685, K13453, K13457, K13459, K13460, K13475, K14497, K15559, K15979, K16225, K16226, K19613, K20599 | Pathway: 00561, 00564, 01100, 01110, 03083, 04016, 04070, 04075, 04120, 04141, 04626 | BRITE: 00001, 01000, 03021, 03036, 04121, 04131
eggNOGGOKEGG
eggNOG-inferred
Pa08g0467Pa08g0467.1

…is-regulatory region binding | DNA-binding transcription activator activity | DNA-binding transcription factor activity | protein binding | nucleus | cytoplasm | regulation of DNA-templated transcription | regulation of cell size | response to nematode | regulation of defense response | protein homo…

Show annotation evidence
eggNOG
Preferred name: PCF2 | Seed ortholog: 337451.A0A3S3N906 | COG: S | eggNOG OG: TCP@131221|AC-7, TCP@131567|A-1*, TCP@2759|G-3, TCP@3193|Fh-13
GO
GO:0000976 transcription cis-regulatory region binding; GO:0001216 DNA-binding transcription activator activity; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0008361 regulation of cell size; GO:0009624 response to nematode; GO:0031347 regulation of defense response; GO:0042803...
eggNOGGO
eggNOG-inferred
Pa08g0474Pa08g0474.1

… | molecular_function | DNA binding | double-stranded telomeric DNA binding | DNA-binding transcription factor activity | telomerase activity | protein binding | nucleus | nucleoplasm | nucleolus | spindle | regulation of DNA-templated transcription | telomere maintenance via telomerase | microtubul…

Show annotation evidence
eggNOG
Preferred name: LOC109009887 | Seed ortholog: 337451.A0A3S3NH84 | COG: S | eggNOG OG: Myb_DNA-binding@131567|jg-21, Myb_DNA-binding@2759|uF-23
GO
GO:0000723 telomere maintenance; GO:0000781 chromosome, telomeric region; GO:0000782 telomere cap complex; GO:0000783 nuclear telomere cap complex; GO:0001650 fibrillar center; GO:0001673 male germ cell nucleus; GO:0001701 in utero embryonic development; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003691 double-stranded telomeric DNA binding; GO:0003700 DNA-binding transcription factor activity; GO...
KEGG
KO: K09420, K11110, K11111, K21769 | BRITE: 00001, 03000, 03032
eggNOGGOKEGG
eggNOG-inferred
Pa08g0512Pa08g0512.1

…364 | GO:0048497 | GO:0048765 | transcription cis-regulatory region binding | DNA-binding transcription factor activity | protein binding | nucleus | plant-type cell wall modification | cutin biosynthetic process | cell differentiation | cuticle development | anthocyanin accumulation in tissues in r…

Show annotation evidence
eggNOG
Preferred name: ANL2 | Seed ortholog: 337451.A0A3S3N3J7 | COG: S | eggNOG OG: Homeodomain@131567|Fe-12, Homeodomain@1437183|JKv-33, Homeodomain@3193|EBp-28, Homeodomain@3398|Erx-29, Homeodomain@35493|DQH-27, START@131567|e-5, START@2759|CM-9!, START@3398|AxM-24, START@35493|tP-19, START@58023|ACB-20
GO
GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009827 plant-type cell wall modification; GO:0010143 cutin biosynthetic process; GO:0030154 cell differentiation; GO:0042335 cuticle development; GO:0043481 anthocyanin accumulation in tissues in response to UV light; GO:0048364 root development; GO...
KEGG
KO: K09338 | Pathway: 04814 | BRITE: 00001, 03000
eggNOGGOKEGG
eggNOG-inferred
Pa08g0531Pa08g0531.1

…O:0071491 | transcription cis-regulatory region binding | chromatin binding | DNA-binding transcription factor activity | protein binding | nucleus | regulation of DNA-templated transcription | response to cold | response to light stimulus | response to red or far red light | seed germination | posi…

Show annotation evidence
eggNOG
Preferred name: DOF3.7 | Seed ortholog: 337451.A0A443PA67, 4432.A0A1U7ZI96 | COG: S | eggNOG OG: zf-Dof@131567|A-1*, zf-Dof@1437183|AGE-21, zf-Dof@3193|Bv-8, zf-Dof@33090|d-5, zf-Dof@3398|GQ-11, zf-Dof@58023|DA-9
GO
GO:0000976 transcription cis-regulatory region binding; GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009409 response to cold; GO:0009416 response to light stimulus; GO:0009639 response to red or far red light; GO:0009845 seed germination; GO:0010030 positive regulation of...
eggNOGGO
eggNOG-inferred
Pa08g0538Pa08g0538.1

…ing | RNA polymerase II cis-regulatory region sequence-specific DNA binding | DNA-binding transcription factor activity, RNA polymerase II-specific | cis-regulatory region sequence-specific DNA binding | RNA polymerase III general transcription initiation factor binding | core promoter sequence-spec…

Show annotation evidence
eggNOG
Preferred name: TRAF2 | Seed ortholog: 337451.A0A443PA53 | COG: S | eggNOG OG: BTB@131567|pg-17, BTB@1437183|DgX-27, BTB@2759|AAM-18!, BTB@3193|CdV-25
GO
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000228 nuclear chromosome; GO:0000242 pericentriolar material; GO:0000381 regulation of alternative mRNA splicing, via spliceosome; GO:0000781 chromosome, telomeric region; GO:0000785 chromatin; GO:0000792 heterochromatin; GO:0000793 condensed chromosome; GO:0000794 condensed nuclear chromosome; GO:0000902 cell morphogenesis; GO:0000976...
KEGG
EC: ec:1.2.1.16, ec:1.2.1.20, ec:1.2.1.79 | KO: K00135, K02174, K09042, K09191, K09228, K09237, K10055, K10456, K10457, K10468, K10477, K10478, K10484, K10486, K10488, K10489, K10490, K10491, K10492, K10493, K10494, K10495, K10496, K10497, K10498, K10499, K10500, K10501, K10502, K10503, K10504, K10505, K10506, K10507, K10508, K10509, K10510, K10511, K10512, K10513, K10514, K10515, K10516, K10517, K10518, K10519,...
eggNOGGOKEGG
eggNOG-inferred
Pa08g0541Pa08g0541.1

…GO:0010089 | GO:0048316 | GO:0048364 | GO:0051321 | GO:0071365 | GO:0090058 | DNA-binding transcription factor activity | protein binding | nucleus | male meiotic nuclear division | chloroplast | xylem development | seed development | root development | meiotic cell cycle | cellular response to auxi…

Show annotation evidence
eggNOG
Preferred name: LHW | Seed ortholog: 337451.A0A443PA25 | COG: S | eggNOG OG: bHLH-MYC_N@131567|A-1*, bHLH-MYC_N@2759|B-2, bHLH-MYC_N@3193|m-7, bHLH-MYC_N@3398|AU-9
GO
GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0007140 male meiotic nuclear division; GO:0009507 chloroplast; GO:0010089 xylem development; GO:0048316 seed development; GO:0048364 root development; GO:0051321 meiotic cell cycle; GO:0071365 cellular response to auxin stimulus; GO:0090058 metaxylem development
eggNOGGO
eggNOG-inferred
Pa08g0581Pa08g0581.1

…615 | GO:0009737 | GO:0045893 | transcription cis-regulatory region binding | DNA-binding transcription factor activity | protein binding | nucleus | response to osmotic stress | response to water deprivation | response to virus | response to abscisic acid | positive regulation of DNA-templated tran…

Show annotation evidence
eggNOG
Preferred name: LOC104609249 | Seed ortholog: 337451.A0A443PA95 | COG: S | eggNOG OG: HALZ@131567|X-6, HALZ@3193|AW-10, HALZ@3398|Bm-12, Homeodomain@131567|XU-17, Homeodomain@1437183|QNQ-38, Homeodomain@2759|ACU-20!, Homeodomain@3193|FTx-30, Homeodomain@3398|GUF-31, Homeodomain@35493|BwQ-25
GO
GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006970 response to osmotic stress; GO:0009414 response to water deprivation; GO:0009615 response to virus; GO:0009737 response to abscisic acid; GO:0045893 positive regulation of DNA-templated transcription
KEGG
KO: K09338 | Pathway: 04113, 04148, 04927, 04934, 05202 | BRITE: 00001, 03000
eggNOGGOKEGG
eggNOG-inferred
Pa08g0609Pa08g0609.1

Pa08g0609 | Pa08g0609.1 | LOC123091203 | 337451.A0A443PA57 | TFIIIC_delta@2759|A-1 | WD40@131567|ko-16 | WD40@2759|ANH-18 | S | ec:2.3.1.48 | ec:2.7.11.1 | ec:3.2.1.50 | K01205 | K07204 | K08333 | K10260 | K11127 | K11310 | K11803 | K12857 | K14299 | K14793...

Show annotation evidence
eggNOG
Preferred name: LOC123091203 | Seed ortholog: 337451.A0A443PA57 | COG: S | eggNOG OG: TFIIIC_delta@2759|A-1, WD40@131567|ko-16, WD40@2759|ANH-18
GO
GO:0000995 RNA polymerase III general transcription initiation factor activity; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006383 transcription by RNA polymerase III; GO:0006384 transcription initiation at RNA polymerase III promoter; GO:0008150 biological_process; GO:0036408 histone H3K14 acetyltransferase activity; GO:0042791 5S class rRNA...
KEGG
EC: ec:2.3.1.48, ec:2.7.11.1, ec:3.2.1.50 | KO: K01205, K07204, K08333, K10260, K11127, K11310, K11803, K12857, K14299, K14793, K24738 | Pathway: 00531, 01100, 03013, 03040, 04120, 04136, 04140, 04142, 04150, 04213 | Module: M00078 | BRITE: 00001, 01000, 01001, 03009, 03019, 03021, 03032, 03036, 03041, 04121, 04131, 04147
eggNOGGOKEGG
eggNOG-inferred
Pa08g0615Pa08g0615.1

Pa08g0615 | Pa08g0615.1 | UBP10 | 337451.A0A3S3MQ34 | DUSP@131567|A-1* | DUSP@2759|HO-18 | DUSP@3398|UW-29 | UCH@131567|Hh-17 | UCH@2759|AiQ-26 | UCH@3398|Hhs-38 | S | ec:3.4.19.12 | K11366 | K11834 | K11835 | K11837 | K11838 | K11839 | K11844 | K11848 |...

Show annotation evidence
eggNOG
Preferred name: UBP10 | Seed ortholog: 337451.A0A3S3MQ34 | COG: S | eggNOG OG: DUSP@131567|A-1*, DUSP@2759|HO-18, DUSP@3398|UW-29, UCH@131567|Hh-17, UCH@2759|AiQ-26, UCH@3398|Hhs-38
GO
GO:0000244 spliceosomal tri-snRNP complex assembly; GO:0001222 transcription corepressor binding; GO:0002181 cytoplasmic translation; GO:0003674 molecular_function; GO:0004197 cysteine-type endopeptidase activity; GO:0004843 cysteine-type deubiquitinase activity; GO:0005160 transforming growth factor beta receptor binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO...
KEGG
EC: ec:3.4.19.12 | KO: K11366, K11834, K11835, K11837, K11838, K11839, K11844, K11848, K11855, K11858, K21343 | Pathway: 03083, 04137, 04144 | BRITE: 00001, 01000, 01002, 03021, 03036, 04121, 04131
eggNOGGOKEGG
eggNOG-inferred
Pa08g0653Pa08g0653.1

…355 | GO:0009631 | GO:0042803 | transcription cis-regulatory region binding | DNA-binding transcription factor activity | protein binding | nucleus | cytosol | regulation of DNA-templated transcription | cold acclimation | protein homodimerization activity

Show annotation evidence
eggNOG
Preferred name: BHLH70 | Seed ortholog: 337451.A0A3S3N9A7 | COG: S | eggNOG OG: HLH@131567|OW-12, HLH@3193|AAN-17, HLH@3398|Abi-19, HLH@35493|gX-15
GO
GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005829 cytosol; GO:0006355 regulation of DNA-templated transcription; GO:0009631 cold acclimation; GO:0042803 protein homodimerization activity
KEGG
KO: K09092, K22495 | BRITE: 00001, 03000
eggNOGGOKEGG
eggNOG-inferred
Pa08g0666Pa08g0666.1

…GO:0006355 | GO:0009908 | GO:0043565 | GO:0048366 | GO:0048480 | GO:1901371 | DNA-binding transcription factor activity | protein binding | nucleus | regulation of DNA-templated transcription | flower development | sequence-specific DNA binding | leaf development | stigma development | regulation of…

Show annotation evidence
eggNOG
Preferred name: BnaC03g71880D | Seed ortholog: 337451.A0A443PAB9 | COG: S | eggNOG OG: B3@131567|A-1*, B3@33090|zE-19, B3@35493|BDn-24, B3@58023|CfD-31
GO
GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009908 flower development; GO:0043565 sequence-specific DNA binding; GO:0048366 leaf development; GO:0048480 stigma development; GO:1901371 regulation of leaf morphogenesis
KEGG
KO: K09287 | BRITE: 00001, 03000
eggNOGGOKEGG
eggNOG-inferred
Pa08g0677Pa08g0677.1

…ding_28_78 | GO:0003700 | GO:0005515 | GO:0005575 | GO:0006355 | GO:2000762 | DNA-binding transcription factor activity | protein binding | cellular_component | regulation of DNA-templated transcription | regulation of phenylpropanoid metabolic process

Show annotation evidence
eggNOG
Preferred name: PHL11 | Seed ortholog: 4432.A0A1U8BBU7 | COG: S | eggNOG OG: Myb_CC_LHEQLE@131567|A-1*, Myb_CC_LHEQLE@3193|Z-8, Myb_CC_LHEQLE@33090|S-7, Myb_CC_LHEQLE@3398|i-9, Myb_DNA-binding@131567|dl-20, Myb_DNA-binding@2759|pK-22, Myb_DNA-binding@3193|BXZ-32, Myb_DNA-binding@33090|Apr-30
GO
GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0006355 regulation of DNA-templated transcription; GO:2000762 regulation of phenylpropanoid metabolic process
KEGG
EC: ec:6.3.4.5 | KO: K01940 | Pathway: 00220, 00250, 01100, 01110, 01230 | Module: M00029, M00844, M00845, M00978 | BRITE: 00001, 01000, 04147
eggNOGGOKEGG
eggNOG-inferred
Pa08g0741Pa08g0741.1

Pa08g0741 | Pa08g0741.1 | LOC123157969 | 56857.A0A200QFV1 | ABC_membrane@131567|aH-23 | ABC_membrane@2759|CyF-36 | ABC_membrane@3193|gmW-49 | ABC_membrane@35493|WZp-46 | ABC_tran|PKFORH@131567 | S | ec:7.6.2.2 | K05658 | 02010 | 00001 | 01000 | 02000 |...

Show annotation evidence
eggNOG
Preferred name: LOC123157969 | Seed ortholog: 56857.A0A200QFV1 | COG: S | eggNOG OG: ABC_membrane@131567|aH-23, ABC_membrane@2759|CyF-36, ABC_membrane@3193|gmW-49, ABC_membrane@35493|WZp-46, ABC_tran|PKFORH@131567
GO
GO:0000086 G2/M transition of mitotic cell cycle; GO:0000139 Golgi membrane; GO:0001654 eye development; GO:0001666 response to hypoxia; GO:0001894 tissue homeostasis; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005768 endosome; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0005919 pleated septate junction; GO:0005925 focal...
KEGG
EC: ec:7.6.2.2 | KO: K05658 | Pathway: 02010 | BRITE: 00001, 01000, 02000, 04090, 04147
eggNOGGOKEGG
eggNOG-inferred
Pa08g0752Pa08g0752.1

…O:0042631 | GO:0043565 | GO:0045892 | GO:2000037 | GO:2000038 | DNA binding | DNA-binding transcription factor activity | nucleus | DNA-templated transcription | regulation of cell size | response to water deprivation | trichome morphogenesis | negative regulation of cell growth | negative regulatio…

Show annotation evidence
eggNOG
Preferred name: LOC103708474 | Seed ortholog: 337451.A0A443PAK3 | eggNOG OG: Myb_DNA-bind_4@131567|B-2, Myb_DNA-bind_4@3193|FG-12
GO
GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006351 DNA-templated transcription; GO:0008361 regulation of cell size; GO:0009414 response to water deprivation; GO:0010090 trichome morphogenesis; GO:0030308 negative regulation of cell growth; GO:0032876 negative regulation of DNA endoreduplication; GO:0042631 cellular response to water deprivation; GO:0043565...
eggNOGGO
eggNOG-inferred

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